BtaINT0136185 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28511410-28514338:-
Coord C1 exon
chr5:28514178-28514338
Coord A exon
chr5:28511628-28514177
Coord C2 exon
chr5:28511410-28511627
Length
2550 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTAGCACCTGCCTTCCAGACC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTGGCTGAAGTTTGAAGAAGATGTCGAGGATGGGGGAGAACGATGGAGCAAGCCTTATGTGGCAACCCTTTCACTGCACAGTCTCTTTGAGTTAAGAAGCTGTCTTATTAATGGGACGGTCCTTCTGGATATGCGTGCAAATAGCATAGAAGAAATCTCAG
Seq A exon
GTAAGATTAGGGGAGAGAAAGCAGAGGATCGTTTGTGGTGTGATGTGGAGGAAAGAAAGAAGAATGTGGCTGTTTGTGCTTGGGCAAGTCACTTACCTTCCTGACCTCAGCACCTTCAGCTCTGGGATGGATTTCTTCCCTGCCTATTCCACAGGCTTGTTCTGGGATGCAAATGACATGGAGTGTGGTTTTCCATTTGCCTGTTTGTTTAGCAAATATCATTTTCTATCTATGCTTGATTATGTACTAGGCACAGGATACGATACAGTTTCTACCCTCAAGGAGCTCACCTTCTAGTGGGGAAAATGTGTGTGTGTGTTATTCTCTCAGTCGTGTCCAACTCTTTGCAACCCCATGGACTGTAGCCCACCAGGCTCCTGTGTACATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCGGGGGGTCTTCCCAACCCAGGGACTGAACCCACGTCTCCTGCATCGCAGGCAGATTCTTTACCGTCTGAGTAAAGATGAAGCTTTTACTCAGGGAAGTAAAGTAAAGTAAAGGGCTTTCCTTTATCAGGGAAGCCCCAGTGAGGACAATAGCCATAGGGCAATTAAAATAAGTGCAACAACCAAGCTCTGGTTTGGTAATAAGTGTGACTGGGAGCTCTGCAGAGAAAAGTGAAAGAAAGATTTTTCAATATGGCAACTAGGAAAAACATGTATGAAATTGAGCCAAAGGACTCCCCACTTCTTCAGCATGATGTAAAGGGGAGATACCTGATGGAGTTTCCTAGTACAGGAGAGTATAAGTCATTGTGTTTGGGGAATGGAGTTTGAGAAACACCTGGGTGCATGTAAGGCTTTTCCTCGGCTTGGCTCTGTTTGGTTGGACAGATTTTTAAGTTTCTTCCAGCTTTTCTTCATTACAAGTATCCAAGTAATTCTGCCTGTCTGGGATCACATAGGGACCTGAGGAGAGGTCTTACCGATGGGATCTTGTGTTAGCACCTTAGTTACATCTGTGAAGACTCTCTTTACAAATGAGATCATGCTCATGGGTTCTGGGGAGTTAGTATATAGTACACAGCATCTTTTGAAGGGGCGCCATTCAACCCACAACAAAAGAAGAGAGGAGTTCAGTTCATCAGTGTCGGATGCTGCAGAGAGGTCCGATGAAGTAAGAACTGGAAGCATCCACCAGATTTAGCAACTGGAAGGTTGTTGATGATTTTATCAAAAGCGGTTTCATTGAGGCAGCCACATTGCAGCAGGTGAGAAATTTTTCTTTTGAGAAGAAATAGAGAGCAAGTGCATGTGCGAGAAAGGGAAGGCAACAGATAAAGGGAGACCAGGGATGGATGTTCTTCTTCTGTTTTTTCTTTCCCAAGATGAAGTATCCTGAAGCATGTTTATATTGTGGGACAAGGAGAACCAATCAATCTAAAAGTTAAAGAGAGAGAAGCTTGGATCTTTGGCTTGAGTATTTGAAATAGATTTTCTTTTATTTATTGCTTCTAACACTTGGATAGTCATGGATGGAGCTGGAGTTGAGAATAGGTTGGAGTTTGAGAGAGGCGGTGGCAGGGGGGTGGATATGTAGGGTTTAAGTAAAATAGCTATGGTTCTTCACATTAGGAACCTGAGGTATTCATGTTAGTGATAAGGGTGGGTAAATGGTCTCACTTGTAGTGAATCAGCACTTTATATATCTTATTAATTTTTCACAACTATCTTCTAAGGATCATATTCACTTCATGTTACAGATGAGGAAACTGAGGTACAGAGAGGTTATCACACAGAAAGTGGTAGAAGAGGGTGGGAGAGATGTGGACGTTTAGCTCTAGAATACATGCCGTTGACTTCTATGCCAGCTGCCTTTCAGCAGCAGGTGTGGGGATTTTCTCCCCCTCAGTTCTGCTGGACTTGGCAGGTCAAGATTGATGCTTGGTATTAATTGTCTTGAGGGCTTAATTAAGAACAAATTAATTATTTTTATGGATTCTACCTTCAGTCACGTGGCCTTCTACAGTTATAGTTTCTCTTGACAATCACAGCAATGTTAAAATCTCAGAGGAAGAGAACCTAGAGGAACTTTGGCAAATGATAGAACAGAATGGCAATCATGTGGACATTTGAGTCAGACAGTCTGGGATTTGAATCCAATCTCTGCAACTCACTAGATGTGAGGTCATGGGGATTTTGTAATTTTGGGGCCTCAGTTTCCTGATCTGTAAAAATTATTATAATACCACCTACTTTTCAGAGGTTTTATAAGGATCAGATTAGATCATTATGTAATAAGTTCAGAATGTAGTTCCTGGCACATGTTAAGTGCTCAATAGTTTCCATTTATAAAAGTAATGATTTGTTACATGAATAACATGTAAAGTGTCACAGCTGCTATCAGCAGTTAGCTCTTTCAGGCACTGATACAGAGACTGTAACCTCAGTGACCCTGGTAGAACTGCTTCCTCCTACTCCGTGTCCCTCACCTCACCTGACCTTGCCTTCTTTGGAATCACTGACCATCAGTTTGAGTGTTCATGTTAGCACCTGCCTTCCAG
Seq C2 exon
ACCTGATCCTGGACCAGCAGGAGCTGTTCAGTGACCTGAATGACAGCATGAGGGTTAAAGTCCGGGAAGCCCTTCTCAAAAAGCATCATCATCAGAATGAAAAGAAGAGAAATAACCTCATCCCCATTGTTCGCTCCTTTGCTGAGGTTGGCAAGAAGCAGTCTGATCCACATTCAATGGATAAACATGGTAAGATTATTAGGAGTAACTGCTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950:ENSBTAT00000023868:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(12.8=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]