HsaINT0153515 @ hg19
Intron Retention
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034]
Coordinates
chr12:51847323-51851323:+
Coord C1 exon
chr12:51847323-51847483
Coord A exon
chr12:51847484-51851134
Coord C2 exon
chr12:51851135-51851323
Length
3651 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGAGTGCCTGCTTTCCAGACC
3' ss Score
6.06
Exon sequences
Seq C1 exon
GTGGCTGAAGTTTGAAGAAGATGTTGAAGATGGGGGAGAACGCTGGAGCAAGCCTTATGTGGCAACCCTTTCATTGCACAGCCTGTTTGAGCTAAGGAGCTGCCTTATTAATGGAACAGTCCTCCTGGATATGCATGCAAATAGCATAGAAGAAATTTCAG
Seq A exon
GTAAGGTTGGGGAAGGGAAAACAGAGCAACTTTCTTATAAATTTAAGAAGTGTGGGAAAAAAGGAGTGTGGCGTGACAGAAAGAATACAGTGGGTTGTGTGTCCTTGGGCAAGCCACAACCTTCCTGGCCTCAATGTCCTTGGCTGTGGGAAGGGTTTCAGGCTAATAAACGACTCTACCTACTTCACAGGTGTATTATGGTATTCAAATGACATGGTGTTAAGTTTCCATTTGTCTGTTTATTCAGCAAATGTTTTATTTTGTATCTGCTATATACTTGATAATGTGCTAGGCATGGGGTTATGAATAAAGTTCCCTCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTCGGGATGCCAAGGTGGGTGGATAACTTGAGCTCAGGAGTTCCAGGCCAGCCTGGTCAACATGGTGAAACCCTGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGCTCATACCTGTAGTCCCAATTATTCAAGAGGCTCAGGCACGAGGATCACTTGAGCCTGGCAGGTCAAGGCTGCGGTGAGTCAAGATTGTGCCACTGCACTCCAGCCTAGGTAGCAGAGTGAGTGTAGGGGTGGGTTGCCCCTACACACCTGTGGGTGTTTCTCATAAGGTGGGACGAGAGATTTGGAAAAGAAAAAGACACAGAGACAAAGTATAGAGAAAGAAATAAGGGGACCCGGGGAACCAGCGTTCAGCATATGGAGGAGCCCGCCAGCCTCTGAGTTCCCTTAGTATTTATTGATCATCTGTGGGTGTTTCTCAAAGAGGGGGATGTGTCAGGGTCACAAGACAATTGTGGGGAGAGGGTCAGCAGACAAACACGTGAACAAAGGTCTTTGCATCATAGACAATGTAAAGGATTAAGTGCTGTGCTTTTAGATATGCATACACATAAACATCTCAATGCTTTACAAAGCAGTTTTGCTGCCCGCAGGTCCCACCTCCAGCCCTAAGGCGGTTTTTCCCTATCTCAGTAGATGGAGCATACAATCGGGTTTTATACCGAGACATTCCATTGCCCAGGGACAGGCAGGAGACAGATGCCTTCCTCTTGTCTCAACTGCAAGAGGCATTCCTTCCTCTTTTACTAATCCTCCTCAGCACAGACCCTTTACGGGTGTCGGGCTGGGGGACGGTCAGGTCTTTCCCTTCCCACGAGGCCATATTTCAGACTATCACATGGGGAGAAACCTTGGACAATACCTGGCTTTCCTAGGCAGAGGTCCCTGCGGCCTTCCGCAGTTTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAAGGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACTCTGAGTTGACACAGCACACGTTTCAGAGAGCACGGGGTTGGGGGTAAGGTTATAGATTAACAGAATCTCAAGGCAGAAGAATTTTTCTTAGCACATAACAAAATGGAGTCTCCTATGTCTACTTCTTTCTACACAGACACAGTAACAATCTGATCTCTCTTGCTTTTCCCCACAGTGAGACCCTGTCTCTTAAAAAAAAAAAAAAAGTAAAAGAAAGAAACGGTTCCTACCTTCAAGGAGCTCGCCTTCAAGTGGGGGAAATAGCCATGGAAATAACAATTAAAAAAAGTGCAACGACAGAGACATGCTTGATAATAATTAGAGAAAGGGGCAACTGGAAGTTGTGTGGAAAAAAGGAGTAAAGAGAATTAAAGACTTTAAAATATAGCATCTAGGGCAGATATTCAGGAACTTGAGCCAAAGTGCCCCTACCTCTTCAGTAAGATGTGAAGGGGAGATATCTGATTGTTCTTCCTGATGTGATTGAGTGTTAAGTTATTATGTTTGGGGCCTGAATGGAGAAACACCTGGATGCATGGGGGAGTTTTCTCTTGAATTGGTTCTGTTTGGCTGGACAGGTTAAGAAATATTTCTCCAAATCTTTCTCTATTTCAAGTATCCAAGTCATTCTGTCTCTCTGGGATCATAGGAGGACCCAGGGGAGGGGTAAGCACTGATGGGACATTGGGCCCCCCTCTTTTTCAGGGAGGTACCCCAGAAGTATCACTCTGACTGCCTGGGAAAAATGAAATTCTCATGTTCATCATTGGAGTCACATTTTGCTAACTTTTGACTATTTGTCTGAAATCCCATGAATGTTCCTTAAAAGGTTGTTTGTTAGGGAGAAGAATCCCTGGGAGCTATTGAAGCTGTTTAAAACTCTTTGTAAACAACAGCAGTCACGGGAGAGTTTTGGACAGGGTAATGATCAATCAGATTTTGCATATTAGAAAGATAATGATGGCAGCAATATGGAGGGTGAGTTGATGGGAGAAATGCATTAGGCTATTGCAGTAGTTCAGGTGAGATCACCTGCACTGTGGGCAGTGTCAGTAAGGGATGGATAATTTTTCTTCTGATAACTTTAAGTGATAAGAGAGACAGGAGGTGATAGATAGAGGGAGACATGAGGTGGATGTTCTTTTTTTTCCCCCAAGATGAAGGGTCCTGAAGCATGATTATAATATAGGGGGAAGGAAACAATGAATATAAAGGTTAAAAATACAGAAATATGGCTCTTCAGCTTGAATATTAAATAGATTTTCCTCATTTATTTCTTCTAGTACTTGAATAGTCATGAATAGAATTAGAAATTGAGGATAGGTTCAGATTTTTGGGAGGCTTTTGAAGAAGTGCATAGGACTGAAGTAAAAGTGCTATGATTCTTCACATCAGGTACCTAATATGTTCATAATATTTTAGGGATACTGATAGGTAAAGTGCCTAAAAGGAAATCAGCACTGTATATCATCTCATTTAATTTCCTGTAACAACCTTTTAACAGATAATATGAGCTCCATGTTACAGATGAAGAACTGAGGTATAGAGAGATTATATACCTTGCTCAAGATCACACAGCTAAAAAGTGGTAGAACAGGGAAACAATGTGGGCCTTTAACTCCAGAACTCATACTGATAACTGCTATGTTTACTGCCACTTAACACTAGGTATTGAGATTTTTTTCCTCCTCAAATCTGTTGGGCTTGATAGGTTTAAATGTGATGCTTGGTGGTAATTGTCTGGGGTGAGTGGTTAGTTAACTTAATTTTTCTTATAGATTTCTCTTCTAAATAGCCCTTTGGAGTTCTACAGTTATAGTTCTTCTTGACAATTACAGCAATGTTAAAATCTTGGAGGAAGGAAATGTAGGGGAAATTTGGCAGATGACAGAACAAAGCAGGTAATAATGTGAGCTTTCAAATTATACAGTCCTCAATTTGAATCCCAGCTGTGCAAACTGCTAGATGTAAGACCTTGGAGAATTTTCTAGCATTTGGGCCTTAATTTCCTCATTTGTAAAAATTGTTGTACTAGTGCTCAATAGTTTCTATGCCCAATAAGAATAATTTGTTACATGAATAAAGTATAACTTTTCACAGTCACTATCATCAAATGGCACTTTCAGACAGGAAGCTGAAATTGCACCTCAATGACCCTAGTGGAGCTGCTTCCCCCTACTCCATGCCCTTTACCCCACTCCACCTGATGTTGGCCTTCTTGGGTTCATTAACCCTCAATCTGAGTGTTCATGTGAGTGCCTGCTTTCCAG
Seq C2 exon
ACCTGATCCTGGATCAGCAAGAACTGTCCAGTGACCTGAATGACAGCATGAGGGTTAAAGTGCGGGAAGCCCTTCTCAAAAAGCATCATCATCAGAATGAAAAGAAGAGAAACAACCTCATTCCCATTGTTCGCTCCTTTGCTGAGGTTGGCAAGAAGCAGTCTGATCCTCATTTGATGGATAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-SLC4A8:NM_004858:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(24.2=100),PF120133=DUF3505=PU(59.3=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)