DreINT0151612 @ danRer10
Intron Retention
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40380310-40383864:+
Coord C1 exon
chr6:40380310-40380470
Coord A exon
chr6:40380471-40383675
Coord C2 exon
chr6:40383676-40383864
Length
3205 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AACTGGTTTGTTGTGTTTAGATT
3' ss Score
6.94
Exon sequences
Seq C1 exon
GTGGCTAAAGTTCGAAGAAGATGTGGAGGATGGAGGAGAGAGGTGGAGTAAGCCGTATGTAGCCACTCTCTCTCTCCACAGTCTGTTTGAACTGCGCAGCTGCATCATTAATGGGACCGTCCTGCTGGACATGAAGGCAGGCAGCATTGAGGAAATAGCAG
Seq A exon
GTCAGTGTGAAATCAATGGGAATGGCTCTCTGCGCATAAAACAGGAACACATTTGAAAAGAATGCCACCTTTAAAAGTTTAAATGGTTCTTGAAATGTCAGTGTGTTAAGTGCTCACTCGCCAATCGGCTTATCATGATCGATAATCAGATCACAGCAAAGCTTGTATTTAATCATGCAGTATACGAAATAAGTGAGAAATGGTACAGCATTTGTGGGTCCTGCAGCGTATTGGGCCTACCTGTACTTCACACACACCTACTCATGTTGGTGATAGACTCATACAAACACTCATACCAACCACCCATGGGCTCATAATTTGAGAATCAAGTGGCACAGCTGTCAACTGCACATCACTTAAAGAGAAGGAGGGAGATTAAATGCGCACTTAAGTGTGTCATATTTGCTATGTGAATAAAATAACATGCAGAGGCAACTGATGCTATTTATAGGTTGACTTTATAGTGTAGAAGTTGTGGCTTTTCGTTTTAAATTATGTATGTTTAAGTGGCTGGAAATGTGAAGTTACAGTACTCGAGCTTCCATTGGAATACATAGTTTGGAAGAAATACTGAAGTTTTGCAAAGAGGGCAGGAAAAATACAAAGTAGAAAGAAAGTGCTTGGTACATTTAGTAAAACTTTAGTTGATAAATACCGCAGTATACTGCCTTAGTGTTTTTCTGTGGCATGATTTCTGAAAGACTGGTGTTTATTGCGAGTAGTTGCTGAAAGCAAATGTGAACATCAGTAAAAACAAAGGATTAAATATGTTAGATCCACAAAAAAATCTGAAACATCACTTCCAGTAATGATGACATATTCACAATAAACAATTTTTTAAATCAATTTTTTGTAAATCAATAAAATGTATGTGTTGCCAAATGGCAGCACTGTGCAATAGAGGAACATGCAATATTGCAATGGGTTAGCTAGCTAGCAAGGTCAGCTGTGAACTTTTAAGTTGTAACAATAACAACATGTATGCTAGTAATATAATGTTGATTACTTGTATGTTAATGACATTTGCATTATGGATAAAATGTAGTTTTAATGGCAATACTACTTTTGAATAGATATGAATACAGGGAACAGTGTATTAGTGAACACCACTATGTTCTATGGTAAGTGAAACAAGAAAAGGACAGAACTGGCTCTTCCTGCAGATGAAAGTGAGGGTGAGATGGGTTTTAGGGACCATGAGAATGATGCAGACTGGACATTTGATAGAGACAGTTCAGGTAAGTTAGCTCAGAGGCAGATAAGACATGCGTAGTATAGTATATAGTATAATATATATAAACATTGTTAGCTAGTAGCTACATTATACTGATGCATCTGGATATATTAGACTTGTTATTTATTTTTTATAATAATTACTGGAGAAAGTATTTATATTTACTGTATGTTGTATACATGATTATACAATATTAGGTTTGTTTTTAATAATATTCAGCAAAAAAAGAATGGAATAAATGAAAGCTATTGGAATATGAGTTGTTGGAAATGTGTATAAGGCGTCATTTATAAATTCTGTGTTAAAGCTAATGATACTGCAGCACCAATTAAATTATTTCAAACAACAAAATAATTCATTGTAAGGAAAGTTTTAAATGAGAAATTTCTAAGTTAGATCCATTGTTGGACATTGTTGCCATGTGGCAACATATCATAAAGTACCTTAAAAACAAAAATTTTCCACATTTTTTACAGCACTTCAAGTTAAGCCATTTTAAGAAAAGAAAAACAGTCAAATATGTTTTTAATAGATTTATTATAATGCCTGCGGTAGATGGTTAAATATTTGTTGTTCCCAAGACTTTTGTCAGGTAGTGTATACCTAGTTTGTTGGTATACTGCTTAAATACTTATAATACCAGATCAGCAGATATACTGTTACTTAAGATGCCGTTTTTTCATACAGAGTTAGGGCGATCTGCATTCTCCAAGTATGCGCCATATGTATGGAATGGGCTTCAAGATATATTGCATATGAAATCTGTACTATCCATTGCCATATTTAAAAATAAATTAAAGTCTGTCTATTCAGAACAATGCACATGTTTTAATAATTGATTATGGTTTGTATTATTTTTGTTTGTGTCTATGTGATATACATTTTTCTGTAACTCTGTCCTATATGCTGACTGTCTTGCCCAGGACTCCCTGGTAGAAGAGATATTGTATCTCAATGGCACTTTCCTGTTTAAATAAGTAAATAAATAAAACTTCAGTATCGTGTATGGTATTAATGTCTATAATATAAATTTCAGAATATTCAGTAACAAAATGCAGGTTAAATGAATGCTTTTAAAATGTTTACATGTAAGTCAACTTTTAAATGCCAAATACTCCCCAGAAACGATGATCCTCGTATAGAGTGTGGTCTCTTGTATAGTAATATAGGCACTTTATTTTTTAATGCAAGACCCAACTTATTCTGTATTCAGTTAATTGTAAATTTTGTCAAATATGAAATATTATTTGGTAACCATTTAGTTTTCTACTCACCGCTACAATGCTTCTTTTAAAATTGTGCATGTGTGAGAGGCTGGAAATGTCTGGTAACCTGAGCTGACATTGGAACACTTGTTTGGAAACAATACTTCATTGTGCAAATCTATTAACAGCACACTTACGGTGCAATTCAACAAAACAACAAAAATGTTCAGGAATGTTGCAATAAAAAAAATTTGATTAAGTTTTAAAAAATCATCTATTAAATAACATAATTAATTGTAATAGTAAATTTTCAATTAACAAGTTTCCATCAATGTTGGTTTCGGCCTTGCTACAAAGTTCTTATGCATAATTCATACAAACGCACTCAGACGTATTGTTTCATTTTACATGTACTGTCTGTCAACCACTGACATCCAATAGACTCGCAATACATCCTGCGTCTCATTGAAACATGACTGATCTGATCAGTGTTGCAGTAGTGGTAAGAACAAGATTAACGCTGGAGAAAGAGAAGGACAGGGAGAGGAGAATTAATTATACTGTAAAGGTTGGAGGAGAGGGATGCAGATTTACAGTGCTGCATCAGGAGGTTTTACAGAGCGCAGTGAAAGCATTGCAGTGTTTAGAACGCTTGAATAAAACAAAACAAATCCTAAATATGGGGCCGATAATCATCAGCATTATACAGATTAATGATGCACCTGATGTGTCTGTGTTCTAATGTGAACTGGTTTGTTGTGTTTAG
Seq C2 exon
ATTTGGTGCTTGAAAAACAGGAGACGCCTCATGAACTGGATGACAGTGTGAGAATGAAGGTCCGAGAGGCACTTTTGAAGCGGCATCACCACCAGAATGACAAGAAGAGGAACAACTTGTTGCCTATGGTCAAAACCCTCACAGAAGCCAACAGGAGACATAGTGAAACTCACTTTATGGACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531:ENSDART00000047416:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]