MmuINT0147271 @ mm10
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100784715-100787352:+
Coord C1 exon
chr15:100784715-100784875
Coord A exon
chr15:100784876-100787163
Coord C2 exon
chr15:100787164-100787352
Length
2288 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGGTTGGACTCTGCTTTTAGACC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GTGGCTGAAGTTTGAAGAGGATGTGGAGGACGGGGGAGAGCGCTGGAGCAAGCCTTACGTGGCCACGCTCTCTCTGCACAGCCTGTTTGAGCTGAGGAGCTGCCTCATCAACGGCTCTGTGCTTCTGGACATGCGTGCAAGTAGCATAGAGGAGATCTCAG
Seq A exon
GTATGGGGCAAACGATGGGCAGAGGAGTTGGGCGTAAACTCGGAAGTATGAGAGCCAAGCATTCTGGCTCACACCCGTAACCTGTCATTAGGAGGCTGGAGAGCAGAATGCCAGCTTTGAGGTCTGAACTCTACAGTGATACTTTATCTCAAGCAAAACAAAACAGAACGTTGAAGCCAGAAAGGAAGAAAGTTAAAGGGTCATTGAGGCGGTGTTTGCCGTGCCAGCTGGGCAGGCGGCCTTAGTGCCATCCCAGGAATCGGTGATGGAAGGACCAACTTCCGGAAGCCGTGCTCTGACCTCCACGAGCTCACCATGGCACTTCCTTTCATCACATACACGCGCACACACGCACACAGTAGTGGTGGTGATAGTAATAATACCTTTTAAAAAGTAAAGATTTAAAAGCACACACTCTTCCTCTAGAAGAGATACAGGAGGTGAGCCATGGCATCCCACACTTCAGCATGGGGTGCGGGGTGGCCAGTCTGGTGTGAGCAGATGTTAAGTTACCATGTTTGGGGAGCAGCATTGGAAAGCACAAGTGTCTAGGTGATTCTGCCTCTCTGAGGAGGGGGACCTGGGGACCGAGGCCAGTCCTGATGGAATCCTGTGTCGACTCCTTTGAAAGGTGGTGCCTGGGTGTGCCACCCACTGTGGGGAAAGTGGGATTAAAAAAAAAGTTCTCTGTCAGTGCCCTGTTCACGGCTGCCGAGGCAGCGGAACCTGGGGGGATTGGAGGCCATAAATGAGCATCAGAGAGGCCATACAGTTTGTATGATGCTGAGGGTTAAAGGGCGTCACACGAGTAAAGTGTGTCTCGCCAAGTCTGAGCTGCACGTGGCGCCAGCTAAGCCTTTGCACCGGGCAGGCAAGCCGCACGTAGCAAAAATCGTTTTTTGTTTTTTTGGGGGGTTTTTTGTGGAGGCTTATAAACAAATAGCAATAGCCAGGTATAATCGAAGTGAACTCAGTGCTGTCCACTACACCTGGCAGGGCGTGGAAGCACATCCCCACACTGCGTTTGAAGAAACTGAGGTCACAGGACATGGTTTTTTGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATAAGCACTCAGAAGTCTCCTCACACTGCTCCATCCTTGAACTGTGTTCCAAAAGGGTCACAACTGTCTTTCACTGACTTGTAACTACATACGTGTCTAAGAGCCTGCGAAGTTCCTAAGAAAGTGTGTGCCGTGTTTTGGATAGAGGAATCCCTGGGAATTAGTGCCCTACAGCCCTCAACAATGAGACCTCAGCCAAGCCTTGGCAGGGCAGCTGTAAGAATGATGGAGGCTGAGTTAATACGTCAGGCCATGGGAAGAGAGGAGGCAGAGCGCTGCCTGCATGGGGCAGTGGCGGAAGGGCACTGTTTCCAATGCAGCTCGGGAGGTAGAATTGATGGTAACAACCTGGTGGCATCCAGATGGCAGTGTCTGTGTGTAATTGGAGCTGCCATGACACTTGAGAGACAGATCTGAACTGAAATGTGCCCCTAGGTCTTCTAAAGGTGGTTCAGGTTATTGTGGTCAGCAGTGGGGGTGGGGACTCCACCTGTCTGAAGCTGGCTCAGGGGTCATAGGTTGGGTGAAAGAAAAGTATCACCCTTGGAGACTGAGGGCCACTCAGCAGTGTCACAAAAATCGGACAACAGCCACCAAACCTGTGTTACCCTCCTAGGACTGCTGGGATACATCTCCATCCGTGTGGTGGCTCGTGCCCGTGATCCCAGCATCCAGAGGTTAAGGCAGGTAGATGAGGTTCAACACTAGCCTGGGCTTGTAGCAAAGTCTTGTCTCAAAATAAAACCAGTGAACCAATCAGTAAGTTTGGAAGTCAGAAATCTGAAATGAGTTTAGTTTGGGCTGCATTCCTCAAAGGCCCACAACAGGAACGTTTCTCCAGCTTCCAGCTTCCGGGAGCTACAGGTGCTTTTTTGTTTTTTGTTTTTTGAGACAGCGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCGGCTACAGGTCCTTTTTGATTGAGGATTTTCTTTTCTTTTGGGGAATTTTAAGAGGGAAAGGAAAAATAAAACTAGTAGTAGAGGGTGGAGCAGCTTGCCGCCACCCGCTGCTCCTTCCCCGAGCACCTGATGCGGGTCCTCTGTTCCTGAGTGTTGGTTGGACTCTGCTTTTAG
Seq C2 exon
ACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032:ENSMUST00000023776:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.2=85.5)
A:
NA
C2:
PF075658=Band_3_cyto=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types