BtaINT0137107 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:363204-371023:-
Coord C1 exon
chr20:370888-371023
Coord A exon
chr20:363302-370887
Coord C2 exon
chr20:363204-363301
Length
7586 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
GCTTCTCTCTTTCTCCTCAGGGC
3' ss Score
12.36
Exon sequences
Seq C1 exon
TTTGCCACCAGGGCCAGTGGACATCGGCATCGTGGCCAAGTGTGACCCCTGCCTCTCCAGCCCGTGCAAGAACAACGGCACATGCAGCCAGGACCCCGTGGAGGGGCACCGCTGCGCCTGCTCCCACGGCTACAAG
Seq A exon
GTACGCAGGCCGCCCCCACCTTCCGGCCGCTGGGGGGCGCTGCGCCCCGCTGACCACCCCTTCTCCAAGGGCAGTGCATAAGTCCACTTTACAGCGCACCCCGAAGCCGTGTTGTCAGCAAACCCCGGAACTGGTGGGGCCTTCCCAGTGGTATCATATCCATGCCAATCACAGAGGACCCCACGTCGTCTTTCTTTTTTTTTCCTTCAGTTTTTTTGGATTTTTTTCTCCAAAGTTTAAACTTTTTATTTTGTATAGGGGTATAGCCAATTAACAATGTGATAATTTCAGGTGAGCAGCAAAGGGACTCACCCATACATATACGTGTATCCATTCTCCCCCAAACCCCCCTCCCATCCAGGCTGGTACATAACGGTGAGCAGAGACCCCTGTGCTGTGCAGTGGAGGGCCCCTGTAGTCTTGATCGTGATGCAGGAGGAAATGTAATACCTGTATTTTCTTGCTCGAACGTGGGCAGATTAAGTCTCAAGAGCTAATTTGCCTCCAATGAGAGACATCCCTTGAACCCACCACCATCCTGACTTCCTTACAGGGGGACTCCTGAGTCTCCCCCACCCCTGACCCCTCTCTGCTTTAGCACTGGTTCCAGCTTGAGGAGGTTCAGGGATGGGGATTAACAGGCCTACAGGCTGCCAAGCCAGCCTTCCCTGTTGACAGGCTCAGCTCAGCCAAGCCGGGGATGGACATTCCAGCTCTCCTGTCCTCCCTGGAGACCCAGGCTAATTCCAGAATAACCCTTGCCTCCTTCCTCCTCTCCCTGCCATATCTAGAGCACATTAATCTCTGGAGAAAATGGAAAAGGTCCTACGCACTCCGCTTGGCACTTTATTAATCTTTTCCTCTGTGAGGAAGGATTTATGAATTCTCATTTTACAGACATGGAAACTGAGCCTCAGACTTGTTGAAAGGGCTTGACTCAATGTCCCAAGCTTGTAAGCAGTAGAGTTGGGTTAGGACCCAGGGCTACATGATTCCTGAGCCCGCCCCCTTTCCCCTGGAGGGTTTCCTGGATAACTGAGCCCTTCAGCATACCTCACAGAGGCCAGCAAAGCCATGACTGGGTCCTCTTCCCCACAACACTGCCAGCTTCCCAGATTCCAGCATCCCCGGGCCCCCATCGGAAGGCTCTAGGCGAGCCGAGAGTCTGTAGACGTGCCCAGCCCATCTGATGCCCACACCTGGTCCGAGCTGAGTGGGAGGGAGCTGGCAGCCCTGGTCTTCTGTCCCCACGGGGGTCTGTGGGTGTGGTGACAAGCTTGACAGGCAGACTGGCTCTGGGCAGCAGGCCCCCGGGGTGACTTTCTCTGCTGTATCCATGCCTCCGGTAGACAGTGTCAGAGTGCCATCTATGGGCTTGAGATAAGACAGCCAAAGGATTTCTTTGAAGCTGGGCAGACGGCCCTCCCTGCCCAGGCAGCCAACCCCAGACACACACACACACATACACACATATACAAGGTGATCCCAGACACACACATATGCACATAAGGTGGTCCCAGACACACACACACTTACATACGTGTGCTCAGTCGCCCAGTTGTGCAGCCAACTCCAGGACCTCAAACTCAGGGTGGTCCCAGACTCATGCCCCCCCACACACACATATACATACTTATATACATGTGCTTTGGAGAAGGCAATGGCACCCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGAGGAGCCTGATGGGCTGCCATCTAGGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCCGCAGTAGCAGCAGCATACATGTGCTTAGTCACTCAGTCATGTCCAGCTCTTTGTGACCCCATAGACTGTAGCCTGCCGGGCTCCTCTGTCCACTGAATTTTTCAGGCAAGAAGACTGGGGTGGGTTACCATGCCCTCCTCCAAGGGATCTTCCCAACCCAGGGATCAAACCCATGTATCTTATGTCTCCTTCGTTGGCAGGCAGGTTCTTTACCACCGCACCACATATGTATACATATTGTAGGGGAAGACGAGAAGTTAAGCAGACATGCTCCAGAGACCTGGATCCTCAAATTCCCTTATGTTCAGTGGAGAAAACGCAGGCTATGGATTTACACTGCTCAGCAGGTGTGGATCCCGGCTTCGTCATTTCCTAGTTGCGTGGTGATAACCCCAGGCTTCCCATCTGCACACTAGGATAGGACCCGTCCCAAAGTCTTGCTGTGAGAATCAGATGTACAGTAACACACGCAGTGTACCTAGAACAGTACCCAGCATTCAGTAAGTACTCAAGAGCTGATATATGGCTGCCTTTTACCTTCACCCTACATGCCGGTCCCTAATGCCAGGGTGGTGGCTGTCGGGAACAGGTGATTTCACCGAGGATTCTCAGTCTGTGACACTGAACTCCCAAGGAGTGTCTGCTGCTTTCCTAGAGCTGTGACATGTATATTTATACATCCCCCGTTCTGTACATGCATAGTCATCTTTTTAAGCATCGACTATGCACCAAGCACCTGGACCTCATGCATTTATTCCTTCCTCTGCTGTTTATAATCACCTTGTGAGGTGGGTGGTGTCATCCCTATGTTAAAGATAACTACGTCACACTCTTGAGTCTCACTTCCCTCACTTTAAAGTTGGCCTGAGTCTGACAGCACTGGAGCCAGGTTCAAAGCCCCAGGCTTCTTCCCATCACACTTGAGGACAATGTGAAGCTTGCCTGGCCCTCAGTGTCAGAGCAGGGAGTGCACCCCTGGGGTTCCTGCAGGATACTGCTATGTGTTTGGGTTTTGCTTATAAGATCCTGAACATCTTGTCGATTTTGGCAGAATTTGAACAGAGATTTTGATGTTTAGGAAGTTGAAGGGCCCAGGCAGGTATAGAGTACATTGCTGCTGCTACTGCTCATGGTGCTGGTGGTGGTGATGATTCTGGTGATAGCATGATGGTGATGGTGGTGGTGGTAGCCATGACAGTACTGTTAGCAGCTGGCATTTACTGAGTGCTTACTGACTGCTGGCAGCATCCCAAACAAGCTGCATGCATTATCCTGCATCAGTTCAGTTCAGCTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGAGAACCCATGAATCGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCATGTCCATAGAGTTGGTGATGTCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAACTTCAGCATCATTCCTTCCAAAGAAAGCCCAGGGCTGATCTCCTTCAGAATGGACTAGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAATCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTTCCTTCTAAGGAGTAAGCATTTTTTGATTTGCATAATCCTCATTAAAGCCTTAGGAAGCCAGTCCTAAAGTGACCCTCATTTTACAGTTGAGGAAACAGGACACAGGAGGTGAGCAAGCCAGGATTCAAAGCTCAAAGTCAACTGGTTCCAGAATCCGTGCCCTCTGCCAGTGCATTCACTGTCCATTGGCAAGCACCATGACAGCAGGGGCTGCAGATGAGGGTCCCTGGCCATTTATAACCTGCCTAAATCTCCAGGACAGGGAGATACACAGGGTGGTGGTAAAAAGAACCCACTGGGACCCTCTGGAGCCTGCCTCTACCTGACATGACCTTGGACAGCTCTGGTTCTCCTCCCCGCCCATTTCAGGCTCCTCAACAGTGAAATGCAGCAGACTGAACCAGAGGGGTCCCTTAATCGCATACTGATCACACTCTTTTTGGTTACGCCTGTCCTTTCTGCCAGTAGAGTGATTGGCACAGTAATTCTGGGTGAATTGCTAAGATGACAACAGTTACCAGACAGCTGCAAAACGCAGCTCAAAGTTCAAGCATTTATCTAGCTGTTCCCAGAGATCTCCATGTTTCCAGTGACTAGTGAGTGACCTTGAGAAGCCACAGTATTATAGAAATAGCGTGGCAGCCACTGCTGAATGTTTAGTAGCAGCTACTGTACATCTGTTATAATGCCAGGTCCCTGAGAAGCAATTGAAGTACATTATCTCACTTAATACTCCTCCAAAAGAAGGACGATCTCTTTTGATAGATGAGGAAACCGAGGTTTCAGAAAAATTGAAAAACATACCCAAGCTCACACACCCCGGGGGCACATTCACTAAACCCAGAACCCAGCTCTCTCTTGCTGCAGAGACTATCCTAAGCCCTCCACTAGTAACTGACTGTCTGTAGCCCCACTTTTATCACCTGTAAATGGGAATAACCATACTGATTGCAGAGCTGTTGTAAGGATTAAAAGGGGCCACACGTGTCTTGGCCTCCCTCAGTACCAGCATTCAGTAGACACTTAACAAAGCGTAACTCTTACCATGATTCTAAGATTTGAGAACATAAAATTGAAAATTTGGCTGATTTTTTGCAGCCATTTAGCTTCACGCACATATGTCCAGTGTCTCAGAACAGTGCTTCTCACACTTTAAGGTGTGCAGGAACTACCTGCAGACCTTGTTAAAGTGCAGGCTCTGGTTCATTAGATCTGAGACTGGGTCTGAGGTTGTGCATGTCTAACAAGCTTCCCGGGGCCACCAGGCTGGTAGTCCAAGGACCACACTTGGAGCAGCAAGGTCTTAGAGCCACCCTGCTGGCCCCGTCTCAGAAACAGGATCCCAGTGGGGTTAGCTGTTTCCAAGGTCCTGTAAAGGAACCTAGAAGGCCTGGCCAAGTCCCAGTCCCCCCTCTGCCACACACACACGCCGTAGGGAGGGGGTCACAGGAGACAACCAAGGAGCATTACAGATCTAGTGGGTTGAGCAAAATGAGGCTCAAGAGCGTGGAACGACGCTAACTGGCCAGGTGCTAACAATGGTGATTGTTTCTGAAGAGCCTGTGAATGACAGAAAGCCCCACCTCTAGGCCCAGGCACCACATTACCGAATGCAGGCTCTGCTTCCTGGATTCTGGTGCCTTGTGGCATCTGGGGCTAGAGGAGACACCACCTCCACCCCTGCCCGCACCCCAGGGGAGGAATCCCCCGGGGAGCCCCGGGTACTTGCAAGTCCCCAGAGCAAAGACACTGGCCCAGGCAGGGAGCAGGGAGGCCGCGCCTTGACCTGCTCAGGGTTCTCGTGTCCTGCACTCCAGGCCCATTTATCCACCGACACACAGACGCAGACACACATACAACACATACCTGGACTATTTCGCTGCTGTTGCTGTTCAGGCGCTAGGTGGTGTCCTACCCTTTGCGACCCCAGGGACTGCAGCTCTCCAGGCTCCTCTGTACATGGGATTCTCCAGGCAAGAATGCTGGAGTGGGGTGCCATTCCCCTCTCCAGGGGATCTTCCCAGCCCAGGGAGTGAACTCAGGTCTCCTGCATGGCAGGTGGATTCTTTACCATCTGACTCACCAGGGAGACCCAAAAATCTATCTCAGACCCCCATAATCATCATGATCTGTATCTGAATAGCTCTTATTTATGGAGCTACGTTACCTGCCAGGGTCAGGCGCGTTAGATGAGTGTGATTTCTAATCATTTGTTAAATCCATACAATAGGTATTATTACTGCCATTTTACAGATAATGAAAACAAGTCTCAGAGAGAACTGGTAATTTCCTCAATTTAGCAGCAGCAGCCAGACCAGCATGTGCGCTCAGATCTGTGTACCTGCGGAGCCTGTGCTTTGAGAGAGGCAGAGTAAGCGCCCAGCAAGCAGTTCCCAAAATTGGCTTTGGACTGGATGTCTGGGTTCAGTTGTGCTGGTTCCACATACTGCTGTGCGATGGTGGACATATTGCCTCACTTTCCAAGTCCATCTTCCCTCTCAGTAAGAATGAGGGTAATAACAACCACACCCATATGGTAGGGGTGTTATGAACATTATACACCATTGTGAATGTGAAACTCAGCATGAGTCCTGGAACAGAAACCGTACTCTGAATATGGGAGTGAGAATGAGCACTGCAGTTTCCATCGACACACGGGCTTGCCAAAAGGGATCTCATGTTGCTCTGGTTTAGGATAAGCCCAGATTGCACCCCAGATCTCCTCCCCTCCGAGAAACCTCTGAAGGGCCCTTTAACTGTGCCAGGCTCGAAAAGCAGCGGACAGACGCAGCCCTGCCTTCCAGCTTCTGGAGGCGGGACCTGAGGCTGCAGCGCTGAGGCAGTGGGAGAAGGCAGAGCACAGCAGGATCCAGCCAGGAAGCCCAGTGCCTCTCTCGTTGCGGGCGCAGGCAGCAGTGGCAGAGCGGGAAGGAGGGTTTTCTCGGGCAGATGGCGAGCAGGTGGTGTGGCGGTGGGAGGGCGCCCATGATGGCCCCGCGCCCACACTGAGCCCACAGACCAGAAGCAAACACAGCAGGCCTCCCCCCCAGGATCACGCAGGTCGTCCAGGGAACTGGCTGCAAAAACCTGGGTGCAGTGCTGGTCTGTCGGTGCCACGGGAGAAGCTGGTGGCAGAGGGCCAAGCCGGGGGCAACTCCCTGGGACGGAGGCCTGGCTCTGCGGTGCCTTGCCCTCACTGTCCTCCTCCTTGGCATGCTCCCCCCACCTGCACACAGTGGGCACCTTCTTAGCTCACATCCCCTTCAGGGTGCCTGGTACAAAGGAATCCCACTCTGCCCCAAATTTCTCTCACAGGGGGTCTCGGGGTAGCCTACCATCAGGACCACCCGCAGAACTTAAGAGCAAATAGCAACACCCATGCTCACGTCTGGACCAATCAGAGACAAGCTTGTCACTTTTGGGGGCCAAGGTCTGCACTTCAGCCATAGTCTACCCTCCAAGTTATAGATTACAGTTATGCCTCAGTGAGGTTAGTGGTAATATCACCTACTGGCATTTATAGAGTGCCTACTATGTGCTAGATGTGTTATGTAATATTTTAAGGACTTCCTTATGGAAAGATCTAGTCAACTCTGGTAACAGCTCTATGAGGTAGGCGTGTAGAAGTTAAAAAGCGAATACAAAGTAAAGGTCAGCCAACTAGGAAGAGGTGAAGCTGGGAGGTGAACCAGCTCTTCCTGGCTCCAGAGCCCCTGCTCTCGGCCTGTGGGTTAGGACGGTGGGGAGGGGCTGAAGTCTGGGCAATAGTGAGGCTGGGGGCCGCGGTCCTGAGCTCGGCGCTCCTCCCCGCGCCACGCACCATGGAGCGACCCAAGGCAGGGCCTCCCTTGGGCTTTCCCCAGGGCACACAGCCAGCTCGCTGGTCCCAGAGCCCCAGGCGACCTCCCCCGCCCTCATCCCAGAGGGAGCTGGGAGCCCACAGGGCCTCCTCTTCACGGCGGCCGTGGAGAGCCTCCCTCACCATGTGCTTCTCTCTTTCTCCTCAG
Seq C2 exon
GGCAGAGACTGCACCGTGCCCATGAACACCTGCATTCAGAACCCCTGTCTGCACGGAGGCACCTGCCACCTGAGCGAGACCCACAAGGGTGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746:ENSBTAT00000049620:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(87.5=60.9)
A:
NA
C2:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]