HsaINT0154555 @ hg19
Intron Retention
Gene
ENSG00000184347 | SLIT3
Description
slit homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:11087]
Coordinates
chr5:168127587-168135105:-
Coord C1 exon
chr5:168134981-168135105
Coord A exon
chr5:168127685-168134980
Coord C2 exon
chr5:168127587-168127684
Length
7296 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CTCCCTCTTTTGCTCCTCAGGGC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GGCCAGTGGACATCAACATTGTGGCCAAATGCAATGCCTGCCTCTCCAGCCCGTGCAAGAATAACGGGACATGCACCCAGGACCCTGTGGAGCTGTACCGCTGTGCCTGCCCCTACAGCTACAAG
Seq A exon
GTATGCTGGAGGCCCTGCCCCCCCGTGTTCATGCCTCAGGCTCCTCCTTCAGCCCTGGCCCTAGAGAGGGGCACCATGCCCTGCGTACCCTCCCTTCTCCAAGGGACAGCCTGGATGAGTCCATCGCACAGGTCACCACTCCAAAGCAGCATTTGCCAGTAACACTGTTCTCTGAACTAGCGGGAGCTGCCAGTCAGAGAGGCCCCCATATGGTCTTGACAAGGATGTCCAGAGAGAAAGAGGAAATGTAACATTTGTATTTTCTTTGTGAAACATGGAGAAATTAAGTCTCAGAGAAAAAGTGTTTCCAAGTAGAGGCATCCCTTGAGCCCACTCTCCCAATTTCCCTTCTAAAGGGATTTCCAGAACCTCCACCCCACCATGCCCCTGCCAAACCCCACCCTCAGAGCAACCAGCCTTGAAAGTGCTGGTTCCAGCTTGATGTAAATATAGGGATTGGGGATTGAAAGGCCTAGGGGCTGCAAACTCACCCAAAAGGTTGATCGGCTAAGATCAGCCAGCAAGAGGATGAGATCCCAGTTCTCCCCTCTGTCCTCCCAGACTACCTCCAAGACAGTCCTTCCTTCTTTCACCCAGAGCACGGTGTCATGCCCCTCTGCTGACCCCTGTGGATATCGACCATGTGCCTCTCACCAGCACCTACCGAGTACAGACTGTGCCAAGTACTGTGCTTGGCATTTTACTCACCTGTTCAAACACCCCCAGCAAACCTAAGAAGGCCTCATTATTCCCTTTTTACGGATATGGAGACTGGGCCTCAGACTGTCAAGAGTTCAACTCAATGTCCGAAGCTTGTAAGCAGTAGAGCTGTGATTAAGACCCTGGGCTTTGTGATTCCAGAACCCAATCCTTTTCCCCTGGAGGGTTTCCTGGATAGCTGAGCCCTTCCTTGGGCTTCACTGGAATCAGCAAAGCTGTGGCTCCATCCTCTTCTGCAGGGCCCGCCCAGCTTCCAGCCTTCCCAGGGCACCCATCCAAAGGCACTGGGCAAGCGCAGAGTTTCAGGACAGCCCCACAGCCTGTCTAATGCACACATCTGATGCAGGTGGAGTGAGAGTGAGCTGGCATCCCCAGGTCTCTGCCCCCAGTGGGATTGTGTGTGCGTAGTGACAGGCTTAGAGGCAGCCTCATTCTGGGGAATGGGACTACCTGATGTATTTCTAGACGATGGCTGTGCTTCTAGCAGATGGTGTCAGAGTGCCACCTATGGGCCTGGGACAAGAGAGCCAAAGGATTCCCTTTGAAGCCAGCCACCTCCAAAGTCTTAAACTTACCACTGAGTCCCAGACCCATACACCGTCATTTCATAAGCTGATTATAAAAATCAGAGAAGAGACTAAATGCATAAGGTCCAGATGAGTGCCTGGCCTTTACTGATGATTCAAAAGAGAACTATACTATGTATGGAATTGAGAATGTTATAAATTCAGTCACAGGGCACCCACACACACAAAAAAAATAATAGGAGGGGAGAATAGAGATTAACAGCAGACATACTCAGGATGTGTGGATCCTCTCAAACTCCCTTGTATGGATTCAGCAGAGAAAATTCAGACTGTGCAATTACACAGAGAAGCAGGTGTGGATTCCAGCTTTGTCATTTACTAGCTGTGTAGCCATTGCTAGTAATTTCATCTGTCTTCCCAGCTGCAAACTAGGACCTGTCTCATAGGTTTGCCGTAAGAATCAAATGTACAGTAATGTACGCAATACACTAGGATGATACCTGGCATTCAGTGAGCACTCAATAAGCTGGCATACTGCTGCCTTTCACCTTTACCCTTGCATGGTGGTCCCTCATACCTGGGTGTGGAATAGGCCATCAGTAACAGGTGGTATGTTGCTAGTTTGATCCAGGATTATCAGTCTATGGCACTGTGAACTGCCAAGAAACTTCAGTCATTCTCCTAGAACTGTGACTGCATTTGTAACATTCTCAATTCCATACATAGTATAGTTCTCTTTTGAATCATCAATAAAGGCCAGGCACTCATCTGGAGCTTATGCATTTATTTTCTTCTCTGATTTTTATAATCAGCTTATGAGATGGGTAGTATCATCCCCATTCTAAAGATAAGGTAAACTGTTTCACATTCTGATTCTTGCTTCCTTCTCTTTAAAACTGGCCTGAGTCTGAAAGTAGTAGAGCTGGGTTTGAAGTCCAGGCTTCTTCCAGCTACACTTGACTGTACTATGAAGCATGACCTGACCGTCAGTGTCAGAGCAAAGAGAGTATCTTCAGAGCTACTGCAGGATAAGGCCACTTGTTTGAACTTTGTTCTCAAGATTCTGAACATCATGTCAATTTTAGAAGAATGTGAACAGAGATTTTGATCTTGAGGAAAGTGTTGAGCCCAGGCAGGTCTAGGGTGCATGATGTTGATGGTGATGGTGAAGATGATGATGGTGAAGGTGATGATGGTGATGGTATCGGTGATGATGACAAAGGTGACAATGGTGATGGTGTTGATGATGGTAATGGTGCTAATGGTACAGATGGTGGTGATGATGATGATAACTATGATAATAACAGTAACATAAGAGCCAGCATTTATTGAGTATCTACTATGTACTGACAGTAGACTAAATAAGGTACATGTATTATCTTGCATACTCCTCATCAGAGCCCTAGAATACAGTTCCTAAAATGACCCTCATTTTACAGTTGAAGAAACTGAGCATGGTAGGTAAGGGAGTTGGGATTCAAAGCTCAGAACCAACTGACTCTAGAAGCTGTGCTCCTGGCCACTGCACTCACTGCCTGTTGGCAAGTGCAGTGATTGCAGGGGCTAAGGTGGAAGATCCCTGACTATTTAGGACCTGTCTGAATTTCCAGGTTAGAGACAAGTAGAGTGTAGCCATGGGAAGAACACCAAGCAGGACCCTCTGGAGCCTGTGCCTATGTGATGCATGACCTTGGACAGAACTCGCTCTTCTCCTCACCTCAGTTTCCTCAGCTGTAAAATGGAGGAGGTTGAACCCAAGGGATCCTTTAACTGAGGGTTGCATCAAATTCTCTGTGCTATGTCCCTGCTTTCCTTCTTGCCGGGGTTAGAGCCCGCCCAAACAGAGCGACTAAGATGGTAGTTCTGCATGAGTGGCTAACAGAAATCCCCAGATACCCACAAAACCAAGCTCAAAGTTCAGGCATTTACCTCTTTCCAGGTATCTCCATTTTCCCATTGACTAGCTGAGTGACCTTGGGAAGCCACAATATTATAAAAAAGCACAGGAATCACTGTGTAACATTTGGTAGCAGCTACTCTTAATCTACTATAATGCCAGGCCTTTGTGAAGCAGTTTAAACACATTATCTCTTGTAGTACTCTTAATCACCTTGTGAAATAAGTTTTATTATCGTCTTTTAATAGATGAAACAACTAAGGTTCAGAAAGATGAAATAATTTACCCAAGCTCTCACACTTAGGAAGTGCATGAGCTACAACCAGAGCTCAGCTATCTCTTGCAACAAAGTCTCTACACTCACAACCACTCCAAGTCAGATTCTCCCTAAGCCTCACTTTCCCCACCTGTAACTGAGAATACTCATACTCATGTGCAGGGCTGTTGGAAGGATGAAAAGGGGCTGTGTGTGTACTTTGCCTACCTCAGTGCCAGGATTCAGTAGATACTTCACAAAGGGTCAGTATTTTGCCATTATGTTAAGATTTGGGGAAAAAATATATCTGTTGGCTGATTCTTTTTCAGCCATTTAGTTTCAGGCACATATGTTCAATGTCTCAGAACAGTGCTTCTCAAACTTTTGTGTGCATAAGAATCACTGGAGAGCTTATTAAAATGCAAGTTCTAGTTCATTAGATCCGAGGTCAGGCCTGAGAGTGTGCATTTTTTTTTTTTAATCAGCTCCCAGGACATGCCAGTGCCACTAGTCCAAGGAGCACGCTTTGAGAAGTAAGGACTTAGCAGCATTCCTCGTGCGATCTCAGAAAGAGGTTTCCAATGAGGGCAGCTGTTCCCAGTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGAGTCTCACTCCGTTGCCAGGCTGGAGTGCAGTGGCATAATCTCGGCTCACTGCAACCTCTGCTTCCTGGGTTCAAGCAATTCTCCTGCCTCAGACTCCTGAGTAGCTGGGATGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGATACAGGGTTTCACCATGTTGGCCAGGATGTTCTCAATCTCTTGACCTTGTGATCCGCCCACGCTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGGCACTGCGCCCAGCCCCCAGTGTCTTTTAAAGGTTGATTCCCAACCTTTTTGGCACCAGGGACCAGTTTCATGGAAGACAGTTTTTCCACGGAACTAGGGTGGTGGGCATGGTCTCAGGATGAAACTGTACCACCTCAGATCATCAGGTATTAGTTAGATTCTCATAAGGAGCGTGCAACCTAGATCCCTCGCATGCACAGTTCACAGTAGGGTGTGTGCTCCTATGAGAATCTAACGCCACGGCTGACCTGAAAGGAGGCGGAGCTCAGGTGGTAATGCTCCCGCCCCATCTGCTCACCTCCTGCTGTGCAGCCTGGTTCCTAACGGGGACCGGTACCAGTCCATGTCCCAGGGGTTGGGGACACCTGTTTTAAAGGAAGCCAGTCAGGATTCCTGGCCATGTCCTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGTGGGATGAGGGGTAGAAAGTGTGGTGGAGGACCAAGGAGCACCACAAATCTGGTAGATTTGAGCAAAATGAGGCTGAAGAGAATTGAATCAGGCTAATTAACCAGGCGTTGGCAATAGTGATTATTTTTCAAGGAGAGGTAAGTGACAGAAATCCCCACTTCCAGGCCCAATTACCATGTCATCAAGCGCTAGGCTCTGCCTCCTGGATTTCTGTGCTTGGCGTAAAGGGCTGCAGGAGTTGCCACCACCTCCACCACCACCGCCATAGTTGGGAGGGTTTGACCTGGAGTCACTGGTACTTACCAGTTCCCCAGAGCAGGGGCTAACCCAGGCAGGGGCTAGAGAGGTCTTGCCTTGACCTTCTCAAGGTTCTTTGTCCTGCCCTTCACGGTCCATGTGTTGGCCACCACCACTCTCATATATGCACCTCTGGAACTACTTGGCACCAACCAAAGACCTGAAAAAGTATTTTAGTCACTCACATTCAGCCCTGCCTCAGACCCCAAGCATCATCATCATCATCATCATCATCATCATCATCATCATCGCTATTATTTATGGAGCTGCCATTACATGCTAGGTGTCTTACATATATAACCATTAACTAATTCCCCATAGGGTAGTTCATATTATTTCCATTTCATAAGTGGTAAAAACAAGGCTCAGAGAGAACTAGTCATTTCCTCAAGGAACACAGCAGCCAACTTAGAATGTGCACTCCCATCTGTGTGCCCCTAGAACGCATGTTTTGAGAGGGGCTAGCCAAGTGGTCCTGCATAGAGGCTCCCAGCACTAACTTTGGGCTGGATGCCTGGGTTCAGCTGCTTGCTCCCCATTTCACTTACTGCTGTGCGATCTTGGCCATATTACCTCACTTTCTAAGTCTGTCTTTCCTGTCTGTAAAAATAGTGTAATAACAATCACACCAATCTCATAGGGTTGTTGTGAACATGATATGCGATCATGAATATAAAACACTTAGCATGAGGCCTGGAACGGAAAATGTGCTCGGCAAAGTGGGTGAGAATTAGTATTACAGTTTCCATTCCACACCAACTTTCAGAAAGGGGCCCTGTGTTGTTATGGTTTAGGATAAAACCAGATACCAGCCCAAACTGCACTCTCCCTGTCCCCCTCCAAGAAACCTCTGACTGGCCCCTTTGCTGGGACAGGGCATGAAGGGAACCAGACGGACATGGCCCATGCCTTCCAGCTGCTGAAGATGGGCCTGAGGCTCTGGTGTTTGAGAGGGTCCACAGCAGAGGCTGTCCTGGGCCCAAGGCCTTCAGCCCAGTTGGCTGCAGCGTCGCAGCCAGGAAGCCCCAGTTCCATTCCATCACATCACCAGCAACAGCAGAAGAGGGAAGAGGATTTTCTCAGGCAGATGGCGAGCAGGTGGTGTGGCAGTGGGTGGGCTCCCATGATCACCTCCACCAGGTCTGTGCCAAGCCACTGAGCCCAGGGCCCAGAAAGGATGCAGCAGTCACCTCCCCAGGCCCCACGCTACCAGGTCCTGTAAGGGACTCCATGCCAAGCATTGGGTGAGACTGGTCTGTCAGTCCCAAAGGAGAAGCAGGAGCCAGAAGGCCAAGAAGAGTCGGGCTGTTCCCTGGGACAGTGGGTCTCATGGAGCTCAGTCTCCACCTTGGGGCTGCCTTCCTCAGGGCCGCTGCCCTCACTGCTCCTGCTGCCTGGCACGCTCCTCTCCCCACCTTCCACACAGTTGGCTCCTTCTCAGCTCACACGTCCCCTTCAGAGGGGCCTGCTCCAAAGAATCCCACACCACCCTGAGTTCTCTATCGCAAAGGTTCCCCACCTGGCCTAACCTTAGGCTTACCTTCAGAACTTTAGAATACCAAAGCCTGGACCCCACTCCAGATCAATCAAGGATGGTTCTCTGGGGTTGTCACTTTGTAGGAGACAAGGTCTGTTGGCCATACTTCAGCCTTAGTCTTCCCTACTCAAGTTGTGGGTTATATTTAAGGTTCAGTGAGGCTCATGGTAATGTTATCTTCTAGCATTTACAGAATGCCTACTATGTGCTAGGTGGATTACACACGTGTAACCTTTTCCTTACATGAAACTTTTCCTTACATGAAAGCTCAAGTTTAATTCTCATAGCAACCCTGTGAGGTGGACTTGGAGAGGTCAAGAGGCTTTTATGAGGTCACGATCAGCCAACCCAGATGGGATGGAGCTGGAATGTGAAACCAGCTGTATGTGAATTCAGCTTTGCCTGAATCCATAGCCTGGGCTCTTGCCCTGCAGTTTGGGATACAGAAGGGTGCAAATTCTGCGAAGTAGTGAGGCTGGAACCTGAACTCCTGGCTTCTCATCACTCTTCCCCTTCTTACTGTCCAGTGACTAGGGGTTAGGGCTCCCATGGGTGGGCTCCAAGTCACACAGCAGGCCTTTCCTAGGGGCTCCTTGTTGTCATCTCCCCAGCCTCATCACAGAGAATGCTGGAACCCCTGGAGTCCCCTGGGCCATGGCAGCCCCAGAAGTCCCCCTAACCAGGTGCTTCTCCCTCTTTTGCTCCTCAG
Seq C2 exon
GGCAAGGACTGCACTGTGCCCATCAACACCTGCATCCAGAACCCCTGTCAGCATGGAGGCACCTGCCACCTGAGTGACAGCCACAAGGATGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-SLIT3:NM_003062:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(87.5=57.1)
A:
NA
C2:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)