RnoINT0139681 @ rn6
Intron Retention
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20477117-20483201:+
Coord C1 exon
chr10:20477117-20477241
Coord A exon
chr10:20477242-20483103
Coord C2 exon
chr10:20483104-20483201
Length
5862 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCCCTCATCTGATCCTCAGGGC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GGCCAGTGGACATTAACATCGTGGCCAAGTGCAACGCCTGCCTCTCTAGCCCATGCAAGAACAACAGCACTTGCAGCCAGGATCCGGTGGAGCAGTACCGCTGTACCTGCCCTTACAGCTACAAG
Seq A exon
GTAAGGCAGGAGGCCCTGCCCACCACTCATGTCCAGATTCTTCTTTTGTCCTGGCTGCAGGGAGAGGCCCCATGCAGCTAGCTGAAGCTCTGTAGAGTAGCCGGGATGACGCTACAATTCACTGTGACCCACCCCCGCCAAGGGACATTCGCCAACCACATCTCTAGTCTCCTCCAAATTGTCTAAGGCTGCCCACCAGACAGCCATCTTGGCTGGGATACTCTGAGATGAGAAGGAAATGCTACCTGTGTGGGTTGTTTTGTTTTGCTGTGAGTCACACAGAGATTGCAACCCAGGTAATTAAAAAAAAATGCCCTCTGAGAAAAGGCATCCCTTGAACCCAGTATCCTGACTGCCTTTTCAGAGAATACAGGGATTAGGGACTCAAAGACTCAATGGTCTGGGGCTTCTGAGGCCACCCACATAGTTGGCAAACTCAACAAAAAGGTGGAGACTACCAGTTCTCTCATCCATTGTACCAGAAACCCAGGCTACTTCCAAGACAATCTTTTCCCCCAGCACAGTCCAGAAGTTAGATTGTGCCCCTACTAATATGTGTAGACTACGTGTCATGCTCTCTGCTTGGCGTCAGGTTCACTCGTTCTCCCAGCAAACCTATGAACAAGGCCTATTTTATAAGCATGCAAACCGAGCTTCCATAGATTTGGGATTAAAACTCAAGCCCATACAGTCCCAAGGCCAATGTCCTTTACCCTGAAGAGGTTCCTGAATAGCTGACCCCTCTTTCAGTGCCTCACTGGGATCAGCAAAGGTGCGACTCAATGCTCTTCCATAGGGTCTGGATGCGCTGGACAAGCCAAGAGTCCAGGGTATCCCGTAGCCCATCTTGTGCACCATCTGCACAGGCTGAGTGACAGGAACACAGCATCCTCATCCATCTTCACGGGACTGTGCCTGGAACAAGCTTCAGAGTGCAGTTTCTAGGGAACAGCTACCTGGTGGCTTTCTCAGCTACTGTCTGGCTGCTAGCAGACGGTGTCAGAGTGCCACCTATCGGCCTGGAGCAAGAAAGCCCAAGGATTCCTTTTAAAACCATCTGTCCCCAAAACCTTAAATGTAGCCTAGAGCCCAAGCACAGAGACTGAGAGTGAGATAATTCAGGCACGAATCCACTGAACCCTGTGCGTATGCGTTCAGTGGAGGGGAAGGAGTCCCAGGCTCTGGAATTACAGAGAAGCCATGTGTAGACTGCAGCCTTGCCATGTGCGAGGTGTAGGTCAATGACCAGTGACTTCGCCTCAGGCTTCTCATCCGGATGCCAGGATGCATCCCACAGGTTGGAAGGAATAGATGTATAACCAGTCACGTGTGCAGTATGGCTAGGAAAGGACCCACTGTATGGGAAGCACTTGATAAGCTGACACAGTCCTATCTTTGCCTTCCCTCTTGCAAGCTGCCCTGCCCCTCATAAGTGGAGCGAGAGATTAGCCTATGGTACTGCTGCTTTCTTTTGGGACTCGGTTCACAAGTGTCAAGGATTTTCATCCACGTTGCTATGCTGCCTTGGGAAACTGGAGATTTCTAAGGGTGCACAGCCATTGCTGTTGGTCTTATGCAAGGCCTGAATGAAGTAATTGGGAGTGTATTATCTCACACAGCGTGCTTAGTCATCCCCAAGACATTATCCTCATCCTTCTCCTCACTTGAAAGGTCAACTGAGATTTGTAAATACAAGTGCTTACCCACAGTCCACCACTCACAAAGCACAGAAGCTAAAGACAGAAATCCTGGTCTTCCCTAGTGAAGGACTCTCCCTACAGCTCACCCTTCCACCTGTAAGAGGAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTCGCTCTCTCGCCGAGCTGTAACAAGTCTAAAAACACATCACGTGCACTTCATCTACCTCGGTGCCAGGCTCAGTAAATATGCCACGTGGCTAACAATCTTGCCACTATTCTGGGATTTAGGAAAGTAAAATATGTCTGATTCTTTCCCTGCCACTGGGCTTCATGCACACATGTTCGGTGGCTCTGAGTAATACTTCCCATGCCTGCCTGTGCCTAGGAATCTTATTAAGATGTAGGTTCTGATTTGTGAGAGCTGGGGTCAGGCCTGAGACGGTATACATTTAACAAGCTCCCAAGGGCTTTCAGGGCTACTAGTCCAAGGGCCACACTTTTACAAGGTTCCTGAGTGGTTCCCCTGCCTCATCTGACACAGAGATTCCAATGAGGGAGCTGCTCAAAGCCTAGATTCTGTCAGAGAGGGGACATGGGGTGGGACAGAGAACAGAGGGAAGAGGACCAAGGAACATCCCAGTTCCCGTAGATTTGAACAAAATGCAGCAGAAGATAATTGAATTGGGCTAATTAGGCACACATTGGAAATGGCGACTGCTTTTCAAGGACACATAAGTGACAGAGATCTTCATCTCCAGTCCCAATTACTATATTCTCAAGGAGTGGAAATGCCTCCTAGATTTCTGTGCTCTGCCTAAAGGTCTAAAAGAGATCCTACGTACCACACCACGTGGGTGTGGGGTGGAGAGTCTGCCCAGGCCAAGGAAGCGGCACTCTGCAAGACCATGAGAGTAGACAGGCCAGATTATAGGCAGGGTTGGAGGCGGTGGTCCCACTGTGTCCTTTCTGAGGTTCTCTTACTCTGTTCTCATAATTATCTCTGTAGTACCACCATCTCCCATGCATGCATCCCTGAACTTTCTAGCATACTCAGCCCTGCCTTAGGCCAGTCATGGTCATCACTGCCGCTTCCTTTACAGGGCTGCATCACCTGGGGGGTATCTTGCAGGCAATGTGATTTACAAGGGTAGTTCATTCCCCCTCAGGGCAGATGGAGATTGAGCATCCTTATATGAAGTGCTCGAGACCAGAAGCCACTCGGATTTCAGGTGTCTCTGGATCTTAGACATATGCATACTAAAATATCTTGGGGCTGGGGGACCTGAGGTGTGGGTCTCAGAACCCATGAAAAAGCCAAGCATCATGATGCTAACTTATCATCTCAGAACTGGGCATTGGAAGCAGGCGTATGAGGAGAGCTTGTTGACCAACCAGCCTAGACAAGTGGTCAAGACTCAGGTCCCAGTAAGAGACGGTCCATTGAGTTAGCTCAGTGGGCACTTACTGCTCAAGCCTAGTGACATGAGTTGGATATCTAGAACCCATTGCTACTAAGAGACATTGTGACCAAGGCAACTTTTACAAAGGACAGCATTTATTTAGGGCTGGCTTACCGTTTCAGAGGTTCAGTCCATTATCATCATGGCGGGAAACATGGGAGCACCCAGGCAGGCATGGTGCTTGAGGAGCCAAGATTTCTACATCTCGATCCAAAGGTAGCCAGGAGGAAACTGTCCTCTGCAGGCAACTAGGAAGAGAGTATCTTCCTCGCTGGACAGAACCTGAGCATCGGAAGCCTCAAAGTCCACACAGTGACACACTTCCTCCAACAAGGTTGCACCTATTTCAATAAGGTCACACCCTCCTAAGAGTGCCACTCCTGTGAGCCAAGCATTCAAACACATAGGGCCAAACATTGTAAAGGAGGAAGAAAAGGACAAACTCCACAAAGTTATCCTATCCACTAACCTCCACATTCACACTGTGGCATATACTGTACACACACACACGTACACACACACACACATGTACACACACGTACACATACACACATGCACACACATGTACACACACACACACACACACACACACACACACACACAAAGATATTCAGAAAATAGAACCTAAATCTAATAATGAAATTAGCCTGTTTCATATATTACACATAGCCTGTCATTTTAGGTAATTTTACTATACCCTCATTTTGATCATGACCTGAAGTTGAGGGTAGAATTTTCCACTTGGGGTGGAATTTTCCACTTCTGGTGATCTGTCAGCACCCAATTGTGTTGCTGTACTTTGGATTCCTGGATTAAGCATACTCCACCTCACTCCCACTTCACGGAACTTAAAAACAAAGTCAACGAGAACCAGTTGTTTCCTTACGGCATGTAGCAGCCTGCCTATACTCAGCGCCAATCCACTCCCCTCCAGAGCCTAGGTTTTTAGAGGAACGGACGGACCAAATGGTCCAGCATAGGTGCCTGGTGCCGAATTTGTACTCAGCTGTCTAGGCTCATCTGTTGGCCGCCTGTTCCCCTAACTGCTATGAAGTCTCAGGCCTCTTTCCTCCTTTTCCAAGTCTGCCTTCCCTATCTGTTTAAAGGGGGCGTGATGATGATTGTACCAATCTCACAGTGTTCTTGGGAACATTATATGTGATCATGAATATGAAACGCTTAGCTTGAAGCCTGGGGTGGAAAACGTGCTCAATACCGTGAGTGAGAATTCCTATTACCCTTTCCATTCCAGACGGTGACTTTCAGAAAGCGGGCCCTGAGTCACTGTGGCTTGGGGGGAAAGCCAGATAGCTCCTCAAAGCACACATTTCCTCTCACTCTCCCCTCTCAGAAACCTCTGCACAGGGCATGGACTCACATAAAGAGCCAGACAGGCAGGGACTCTGCCTTCCAGCTCCTGGAGAGGGGCCAGAGGCTCCAGCAGGCAAGAGAGTAGGAGGATACATCTGGGCCCACAGTGGAGGCTCTCTTGGCCTAATGCCTCGGGCTCAACTGGCAGTAAGCACACAGCCAGGAACCCCCCAGTCCCATGCATAGACACTGTCCCAGTCGTAGACACTGGCAGCAACAGAAGTCGGGACAGGCTCTTCTCAGACAGATGGTGAGCAGGTGGTGGTGGCAGTGGGAAGGCTCCCATGATCACTCTGGCCTGGCATGTACTCAAGTCACTGAACCCATGGCTCAAAATTCTATACAGCAGATACCGCCCCAGGCCTGGTGCTACTAAAGTCCTATGGCTTGCATGTTCCAAGAGAGTACAGGACCCATGTCCCAAGTTATAGGGTTTGTGTCCCAGGAGAGAAACAGGAGCCATGGGGGCGAGAAGCTCCCTGGGAAGTTAGGGTTAGTGTCTACAGTCTGAGCCTTGGGGTCGCCCACTCAGAACCTTTGTCCTTGTTCCTTCTCCCTGGCGTAATCATCCCCACCTGCCATTCACTGACTCCTTCTCAGCTCATACCTACCCTGAAGAGGAACCTGGTACAATGGAACTCTACTCCTAACTCCAAACTGTTGCAGTTCTTAGTCTGCCCTGGCCTTGGACTCTCCTTTGGAACTTCAGAACAAATGCAGACACCAAAGCTGTACTACAAACCAACCAGTCGAGGAGGCAGTGAGGGGTGGGGGGAAATGTCCCTTTATAGAACGCAGGTCTATGGGCTATACCTTAGCTCTCCCTGCTCGTGGCATGGATGATATTTAAACCTCAGTAACAGAAATGGCAAGACTGTCTGCTAGCTTTTACAGAACGCCTACTGTGTGCCAAGTGTGTTATATAACGCACAATGCTTCCTTCTGTGAAACCTCCCGAGTAATTCTCATAGCAACTCTGTCAGAGGGTAAAGGCTTGTGCCCGTTATCTGCCAAGAAGAGGGGGAGCGGGAATCGAAAACTCACCTGGACTCCCAGCCCATACCCATGCCCTGCAGCTTAGGACAGAGAAGCCTGTGAACTAGGGAACTGGTCATAAAGGAGCCTGAACTCTGCCCTCTCAACACGACCTCCCCTTCTCGTGAGGAGTGAGAGACCAGGCAATGACTCCCTTTGTCTTGCACTTGTGTCCATCTCCGCTCCATCCCAGAGGATACTGGGAAGTCCCCGGGGTCTCCTGGGTCACAGCAGCCACCAAAAGCCTCACTTAACAGACACTTCTCCCTCATCTGATCCTCAG
Seq C2 exon
GGCAAGGACTGCACCGTGCCCATCAACACCTGCGTCCAGAACCCCTGTCAGCACGGAGGCACCTGTCACCTCAGTGAGAGCCACAGAGATGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377:ENSRNOT00000009714:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=PU(64.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]