BtaINT0139161 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32727208-32731080:+
Coord C1 exon
chr15:32727208-32727280
Coord A exon
chr15:32727281-32730997
Coord C2 exon
chr15:32730998-32731080
Length
3717 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GATCCCTTTTTTGTTCTCAGTGA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGCTGCGGTGACCAGTCGTGGAATAGGAAATTGGAGCGATTCTAAATCCATTACCACCATAAAAGGACAAG
Seq A exon
GTAAATGATTCCAGCATTTGCAGATTTAGAGAAGCTAGAAACCCTTAGAAAAAACTCTGTGTGACTGGCAGATGAAGACGCGTAGATCAGAATAGTTCACACAGCCTCCCTCCCCACAACAGGTGAACTTCTCTGGGTGTCTCCGCAATGCTTTAGACATGAAGTCTTTCTGGGGGGACTGTTGATCATTCCTCCTCCTATATGCTATGCGATGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCTATAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCAGGAAAGTGAAAAGTGAAAGTGAAGTCTCTCAGTCATGTCCGACTCTTAGCAACCCCATGGACTGCAGCTCACCAGTCTCCTCCGCCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGTCCTCCTATATAGAACTGGGCATCTGTTGTAGCCAAAGCATACAGGTGGATTTCTGAAGGCCGCCACACCTGACTCTGCTTCTCTGCAGAGTATCCGTGACATAAGGAGTCCTCCTTTCTCAGCCAAGATAAAAGATGGTTTCGTCCATGTCGTCTGTGGGGTAAGAGAGTACCCCATATACTCTCTTGTAAGAGAGTGCCATGCCTACACTCGTTACTGCCCTGGGGAAGCCAGCAACAACACATAGGTGGCAGCTTCTGTTTTTCTATCTCTAGAGCTGATCAAAGTCATGGACGTGGAAGGCTGTCATGCCAGCTGCTCTGCATATACCAGCTTATCTCATTGAGCCCTCAGAACAACTATAAGGACAGATAAGGGAGTGGAAAGGTTGTGTCATTTGCACATAGAGCTGTGGTTGGAACCTGATCTGCTGACTCCAGAACCTGAGCCCTGAACCGCTGCAGGGCCTGCCTTCTGGGCGGGGCTCCTCACTGGGCATGCGTGCCTCACATGTGCCGCCACCCCATCCTCGGTGTGGAGTAGGAGCCAATGAAGTCACGGATGAGTGAGTGAATTGAAGCAAGTGAACGGAAGGCTCTGGCACTCAGTGGGAGACACACCAGCTCATCTTCCTGATCCTAGCCTTGGCACTTTCGTTTCTGGATTGGCGGGCGGGTGCAAAAGCTGGAAATGCCACCAGGAATGTGATCAGGGGATTTTGCTTTAACCTGAGTCTGTGAGAAATAGGCTCTGGGTCTTGAAGAATCACTGTCTGGTTGCCTTTAAAAACATGGGGTGGTTCAGATCAGTGCAGGGGCCAAGCTGAACTTCATGAAGTCAGCCAGTCCGTGAAGCAGGGAGATTGTACATGTTGGAAAATGTGTGTTGAGTTCACACTTCCTTAGAGTTGTGTTTTGTTTTGTTTTTAGTGATTTTTGGCTGTGCTGGGTCTTTGTTGGTGCAAGGGTTTTTCTCTGGTTGCAGCAAGCAAAGACTACTCTATAGTGCTGTGCTTGGGCTTCTCATTGCAATATCTTCTTGTTGCAGAGAATGGGCTCTAGGGTACATGGGCTTCCATTGTTGCAGCTCATGGGCTCTTGAGCACAGGCTCAATAGCTGTGGCTTAGTTGTTCTGCAGCATGTGGGATCGAACCCCTGTTCTCCTGCATTGGCAGGTAGATTGTTTACCACTGAGCCACCAAAGAAGCTCCTCCCCTAGAGTTTTGATTGTGGTATTATTTTCCTCTACAATCAGTCAGAACATACTGACCATACCTACTGAAAAGGAGGGACATTGGAAAGTCATCAGAAAAACAGGTAGCATCTTGAATTCCTCATCACAGTTCACACCTGCATTTGAAAATCTCAGTGGTTGGAGGTTGGTTACTTCTCTCAGGAGACCTGGGTTCGATCCCCGGGTCGGGAAGATCTCCTGGAGAAGGAAATAACAATCCACTCCAGTGTTCTTGCCTGGGAAATCCCATGGATAGAGGAGCCTGGGGGGCTACAAGTCCACGGGGTCGCAAAGAGTTGGACATGACTTAGCAATTAAACAGCAACAACAGTGATCTTTAGGATGAATCTCAACTCGTCATACGTGTATTGGTTAGAAGGCAACTGTGTGCAGAGTCAAAAAGCGTGTGTTATGATCTGTCTGTGACCTCGGGTCCTAGTAATGTAAGAAGATGGGATTTGAAACAGCAGGAGCGTCACCCAGAATGACCACCGTCATAGTGGACACGATGGGTTAATGGTAACAACAGCCACCATATTTTGAGCACTGCAGCAAGCACCTTGCAGGTTGTTTTTATAGGAATTAATCTCTCCGAATCCTTATCAACCCAGTGAGTATTCTTATACTCATTTGGTAGCTGAGGACACTGGGACTTGGCAAGGATTGTGCTGTAACTCCCACCACTATGATTATAACCCAGGTCAGGTTTATAGCAGCACCTGAACTATTTTGCTCTGAGCTGGCTGCCTGCAACTCCTAATACCCTTTCTTCTTCTGCATGCTGTGTTTTCCTCAAGCCCACTTTTATTGAACATCTAGAGAGACTCCTGTAATGTTTGAACCATCTCTTTGCCACCAAGTCTTAGCTACTCCTTTGGGTCTTTCTTGCCTTGCTAATATAAAAGGCATATGTGCTGAGAATCTAATCCATTTGAATATTATATTCTGATGAAGCTGACCCCATCAAGCCCTCTTAGCTTACACCTGTGGGACACTGTTGGGTTTCTGGTGGGTAGACATTCAAAATGACCAGTGTGGTGCTATTCACTTGAGCCAAGAGGAACCCTTTTCTCTCTGCTACCCTTTCCCTGCCCCCTTAGCTCCCAGGCTGAGCTCTGGCATTTTTTTTAAATTAGATTAATTAATTAGGCAGCATGGAGTCTTAATTGTGGCGTATAGGATGTTCTGTTGGGGCGCACAGATTCCCTAGTTGTAGTGTGTGGCTTAGTTGCTCCGTGGCATGTGGAGTCTTAGTTCCCCGACCAGAATTGAACCCACATCCCCTGCATTGCAAGGCAGATTCTTAACCACTGGACCACCAGGGACGTCCCAAGCTCTGGTCTTTATGAGGATGCCAGTATCTCATCAGGTCTTTAATCTGTCGTGGGTGGGACTTTACCAGAAAACGAGAAAGGGAACTTTGAGTATCAAGACACATATTATTTTACTGAATTTTGCCATCTCTGTCAAGTACAGATGGTATCTCTAGGTTTAGCAAGGACAGGTAGCTTGCCCCAGGGCACACGGTTTCTAAGTGTCTCAACAGGAATTTGAATTCCAGGGCCCAGATTCTTTCCATTTCGTCCCACATACGTCTACAAGTTAGGACTTAAGATTTAGCATGCTGTCAACCTTCAAAAAGGACCTGAGGCCGCTGGGACTTCACTGGTGCCAGTGAAGGTGGTTCCCAGTGTGACCCCCAGACTTTGCAGAACCAGGCTGAAGCTGGGCTGACTTGGGGCATTTACATAATGGGACTTTTCTGCTCCACCTAATTGCCAGGATAGCTGACCCAGCCGAGATAGTTCTGTGTTCACCAGGCAACTGTGGACCCAGCCCCAGCCTCAGGACAACAGTGGTCAAAGCATTAGAAGAGTCAGAACTGCCAAAGCAAAGCCTTTTCTTTCCCAGCTGAAAGATTGCTTTGTCCCTTGAGTTGAAAACTGTGAAGTCCTGCCTTCTTCACTTTTCATCACATGGTTTCTCTCTTTGGATCCCTTTTTTGTTCTCAG
Seq C2 exon
TGATCCCAACACCAGACATCCGCATTGACAGCTATGGTGAAAATTTTCTAAGCTTTACTCTCTCCATGGACACGGACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611:ENSBTAT00000019457:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(14.5=48.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development