GgaINT0138773 @ galGal3
Intron Retention
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3535095-3535853:-
Coord C1 exon
chr24:3535781-3535853
Coord A exon
chr24:3535178-3535780
Coord C2 exon
chr24:3535095-3535177
Length
603 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATTTCTCCCTTTCCTTCCAGTCA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTTGCTGCGGTGACCAGTCGAGGAGTGGGAAATTGGAGCGTCTCTAAATCCATAACCACCATAAAAGGCAAAG
Seq A exon
GTGAGTGCTGTTATTTCAGTAAGCGTTGCTGTCCCTCACTCCGAGGACTGCAGGTGGATTGCCATTGACTCATGTAGGCCCTACCCTGGGCTAGGCAGGATGCACCTCCACCAGCTCTTCCAGCATCACTCATTGAGAGAATGCTTGCTAATTCATCTCCTTCCTGCTTGTGATTGTGATGGTTGCTGCATTTCGTGTAGATCAGACCACTAAAAGACTACTGAGGCTCCCAGAAACTGTCGCAGCGTTGTGGTCTGACAGTAGGTAAACTCAAACAACACGACAAATTGTTTCCCTCTGAAGTGCTGTTTGATAAGCCTTTTGAAGTCATTTGTATTCCTGACAAGGCTTTCTCCTAGCCTATATTCTGATGTCAAAATTGTCTGCTTTCTAGTTTGTTAGATAAAAGTGCACGCTCACGGCGTTGACAAAGAAAGGAAAGAAAAACATCATGCTACTAAAAATGCAGAATTCTTGATTGTGTGAAATACAGGAGTACCTGGTCATTGGAGGCAGTTGGAAAGCAGAGGCAGAAGAGCCATCAGAACTCTCCGTGAAGTTTCTTGGGATTGCAATAACAGCCATTTCTCCCTTTCCTTCCAG
Seq C2 exon
TCATTCCTCCACCTGTCATACGCATTGAGGGCTACACTGAGGACTCCATAAGCTTCAGTCTGAAAATGAATACTAATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598:ENSGALT00000010639:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(14.3=48.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]