DreINT0154469 @ danRer10
Intron Retention
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21616606-21618415:-
Coord C1 exon
chr15:21618349-21618415
Coord A exon
chr15:21616689-21618348
Coord C2 exon
chr15:21616606-21616688
Length
1660 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TATATTTGAATGTCTTTCAGCGC
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTGGCTGCCGTCACAAGCAGAGGCGTTGGAAACTGGACAGAAATAAAGTCTATTATTCCTCAAAAAG
Seq A exon
GTAATTATGCTGTATAAACCCCATTGCGGAGCACTGGCTCCCCCTGCTGGACATTTACGCTCAAGCATTTTGTCTGATAAGGTTGTTGAAACCAAATACAATAGTCACGTAAATTCCCATTTCAGATTCTGTATTAATGGGTTAATTTGAAAAGAAAACCTTTCATACTAAAAAAGTGCTTACTTGTATAAACTTTGAATGGTAGTTTATCAGTTAATATTCACATGCAATATAATCCAAGTCAAACACTAAAAAATCAATTATATAAATAATCAAAATTGTATATTATGAAATACATATCAATGTCTCAATGACCTCTGCAGAGTAGACCACTTGCGTATTATATACTTAGTGTTGATAATGTTTTTTTTTTATAAATGTATGTATACAGTTAATGTATAGATACAGTTACATTAATATGCTTAGGCAATATAATCAGTCAAATCTCACAAAATCAGTTATATAAATCATCAAAATTATATTTTATTAAATATATATCTATATCTCAATGACCTATTTAGAGTAGACAGTATATGTACTGCATACATAGTGCGTTTAATGTATGTATACATTTGAAGTCTAAATCAATAACCTTTCAGTGAGTTATTTTTTACGTTTTCAAATATTTCCCAAGTGTTTTAACAGCAAGGCATTTTTCACAGTATTTTCTATAATATTTTTTCTTCTGGAGAAAGTTTTTTTTTTTTCGGCTAGAATAAAAGCAGTTTTACATTCTTTTAAAACCATTTTAAGGTCAATATCATTTGCACCCTTAAGCAGTATTTTTATTGTCTACAGAATAAACCATCATTATACAATGATTTGCCTAATTACCCTACAGTGCTTCCCATAGGTTTGAAATATACTTGTGGTGGTAGCCAGATTGAAACACATCCTTTACTGTGGCTCATAAATGGTTAATGAATAACGTGAACAAAGAATAATATGATTTTTAACAATGCTTTTAAGTTCAGGTTGCAAATGTTTATTGGCATGACGTTTTAGTACAGTATTGCCAAAGCATTTTAGATGGGTAAAAAATATGTAAAATATTAACATTATCAAATGAATAACATATACAGCGAAAGAGAAATAAATAATTCGAATAAAACATGTAGATTATTTAATAAGGGTCGATTGACCATTTCTATTGGTGTACATATATTTTGCAGCCAGTTTAGATGTCATTTCGTCCTCTGAGTGTTTAGTAAAGTTTTTTTAATCGTTTAGGTTAAAGAATCTATTGTTTACTTTTTCTCACTGTGCGCACTGTCAGCTGCGAAGACAACCCAAAAGTTTTTAAATAAACTTTAGGAAGGAAAAGTCGACTCCTGGACATTTGAGGAGATTTAAAAACAAGCTGCATACTAGTATCTTGATAAAATATGTAATTAAATATTATTTACTGTCATCATGACAAAATTATTAGAAATGAGCTATTAAAACTATTATGTTTAGAAATGTGTTGAATAAATGTTCTCTTCATTAAACAGAATTCTTCAAAAATGCACTTCAAAAATGTATAGGGGGCTAATAATTCAAGAGGGCAAATAATTCTGACTTCAACTGTATATACAGTTAAAACATATTACTCTTTACATCACACATATTAGTGTCTATTTTACTGTTTAGTAATCATGTATATTTGAATGTCTTTCAG
Seq C2 exon
CGCTCTCTCCACCTAAAGTGACGATCACCAGCATCACAGAAGACTCAATGAGTTTGTCCATCTCTAATGATTATAAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892:ENSDART00000156995:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(14.3=52.2)
A:
NA
C2:
PF0004116=fn3=PU(31.7=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]