BtaINT0140463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99177866-99178210:+
Coord C1 exon
chr11:99177866-99178062
Coord A exon
chr11:99178063-99178156
Coord C2 exon
chr11:99178157-99178210
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
AACCCTGTTCCTCCTTCCAGGAA
3' ss Score
11.85
Exon sequences
Seq C1 exon
CGCAAACACCAGGAGATTCGAGCTATGAGAAGTCAGCTCAAGAAGATTGAAGACCTGGGGGCGGCCATGGAGGAAGCGCTGATCCTGGACAACAAGTACACGGAGCACAGCACCGTGGGCCTGGCCCAGCAGTGGGACCAGCTCGACCAGTTGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATCCAGGCCAG
Seq A exon
GTACCTGCGGCTACCCTGGGCGGGGGCCGGGGGACACAGGTCACCAGCTGCCTGGGCTGGAGGACCCGGTCCCTAACCCTGTTCCTCCTTCCAG
Seq C2 exon
GAACACGACCGGAGTGACCGAGGAGGCCCTCAAAGAATTCAGCATGATGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327:ENSBTAT00000020395:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=90.9)
A:
NA
C2:
PF134991=EF-hand_7=PU(16.0=63.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGCTGATCCTGGACAAC
R:
TGCTGAATTCTTTGAGGGCCT
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development