BtaINT0140953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010390 | SRI
Description
Bos taurus sorcin (SRI), mRNA. [Source:RefSeq mRNA;Acc:NM_001075350]
Coordinates
chr4:72786427-72796824:-
Coord C1 exon
chr4:72796740-72796824
Coord A exon
chr4:72786511-72796739
Coord C2 exon
chr4:72786427-72786510
Length
10229 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTTGTTCCTTGTCTTACAGTAC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GATCATTCTCTTTGACCATCCAGCAAGGATATGCTCCTCTAAGAATCACGAGTTTCTGCATCTAAGACCTCACATCAAGATGCAG
Seq A exon
GTAAGTAGAGATATGTATGTGAGGTTAGTTCTGTAACACAACATTCTAATTCTACTGATTAAAAAAAATATGGAAGTTCCTAATCTATGAAATTCTATTAACTCATTGTTTTTGGCTGAGAATATGCCAAGTTTATAAAATATCTAAACACTCCTAGGGAGCTAAAATTTTTATAAAATATCATCTAAATGCTCTTTGGGAACTAAGATTTAAGAATGAAGCACAGAAATGAACAAATATAGTATACGAAATTATTTTTAAATAGAAAAATGTGTTCTCAATCTTGAGATTTTTAAAGGTATACAGAAATGACAATTGGATTTCTCCATTGAGAATATTAGCATAGACTAATAGAATATTTAAGTTATATGCAGCTTTGGCTTTCAAGAGAATTTAGTTCTCCCAAATTTCCCTAATTTACCAAGAGAAAAGCTTTTTTTTTTTTTTTTTTTTTTTTTGCTCTGAGAAAATTGGGTCTAAGTTAAAGTTATTTCTCCCGTTTTAATAAAATGAAAACAGTAGAAGTTGCTTCATAGAACAGTAATTCTAGTAGATTCATCAAAGAATGTCATGAATTGATGCTAAGATACATGTAGCACTTCTGATAATATGTTTTAGACTGAGATAATTAGATTGATTTTTCCATACAGAGTCTTAGACACTCGTGTATACATGCTCAGTCACTCAGTCGTATCCAACTCTTTACAACCCCATTGACTGTAGCTTCCAGGTTCCTCCATCCATGGGATTATCCCTGCAAGAATACTGGAGTGGGTTGCCATTTCTTCCTCTTTCAAGGGATCTTCCCCACTCAAGGATTGAACCTGCATTTCTTTCAGCTCCTGCAGTAGCAGGCAGATTCTTTACCATTGAGCCACCTGGGAAGAAGCCACAGATACTTGACAAACTGATGCTTCTCAGTGTGTAAGAGCACTGATCCTTTGCTTACCATAATAGTAGTATCACAATTTGTGTTTTATCAGCAAAATACAGGCATGAGAATTAATTCACCCAGATTCCTTTTTCAGATTTGCCATTGATTTCCCATGATATGAAAACAGGCAAGTTACTTTCTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATAAAGTAAGAGTTTATTTTACTTTTAATTAAGAAATCCTCAATTTAAATATTATCATAACTGATTTATGTATAGGCTTCATACTAGTTTGGCTTTCTGGAAGTAGCTTCTCCACCTGGGTGCCTGGGAGTCAAAACGGGTCATTCTTCCTCCTCCAGAGCTCTAGTTTGAAATTTTCTTCTGTTTTTCCTCCCTACCAGTGCCACCTCCATACTAATAGAGCTGATGGAGACTCTACCCTCTACCCCTGCCTGGTTCTGGGTAGACTTAGTAACATCAGGACTGGGAGGATAACTGGGCAGAAAACAAGCCGGAGTGAGAGCTCCCCACCCCCTGCCTTGCTCTGCCCTGGCCCCAGGACTGGTTCTTTTCAGAAAAAATATTGAGGGTTATGAAGAACTTTTGAGGGGCTTGCCTAGGAACCAGTCACAAAATGACTTCTATAGGAAAATACATCCCAAGTTGCAAATACCCAGCTTCTAGAACACAATGTCTTTAAGAGTTGAGGACACCAAGTAATATATGAGTCCACCGTTCTTAGGAACACTCATCCTCAGGGAACTGAACGTAAGTGATTTTCCACCTGGGAATACAGCTCCACTACTTTATGATGTTGCTACCAACAATCATTTTTCCACAAACTTGGAGATCTGAGTTCTAAGGCATGATTTTTCAAATCATGAAGTGACAGATGCAGATTAAGAGTTAAACGAAAGCTGAGACCTTAATCCGGAAAAGGTTATTGCTCACTTCTTCCTGATATGTTAGACCTGTGATTAACTCAACTGTAGGAAATGGCAAAACAATGGCAGTTACTTAGCTAGAGGACTCCTTCCAGCACTTCTCTGACTGAGACATTTCTGGATGTCATATGCAGTACTTTATATTAACTTTTCTTCAGGGACAGAAAGTATCCATGTGCCTTTTGTCTTCCAAGTAGGAATATAGATGACTGGGGAGAGTACACCACAAAAGAACAAGACCCTCTATGAGAAGTATATTCAGATCAATTCACAATTTTAATTGGAAGAGCCAAATTTTTAAATCAGGCTAGGCAAGGCCTTCAAGAGCTTGAGCCATGTACCTTCTCTTTCCTCATCTGTAAAACAACAAGGTTGGGGAAGCTGATTACAAATGTTTCTGTGATTCCAATGACTTCCCCGAATGACTCTGATCCAGAGTCTGTCTAAAACCTCCTATACTGAGCCATCAAAAAGAACAAAATAATGCCATTTGCAGCAACATGGATGCACCTAGAGCTTATCATATTCAGTGAAGTAAGTCAGACAGAGACAGACAAATGTCATATGATATCATTTATATGTAGAATCTAAAATATGATACAAAGGAACTTATTTACAAAACAGACTCACAGATTTAGAAAACAAACTTATAGCTTAGAAAACAAACTTTATTTTTTTTTTTTTTACCAAAGGGGAAATATGGGGGGTGAGATAAATCAGGAGTTTTGGATTAGCACATACAAACAACTATATATAAAATAGATAAACAAGGTCCTACTGTATGGCACAGGGAACCATACTAAATTTCTTGTAATAAACCATCAGGGTAAATTTTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATTTGTTGTTCAGTCGCTAAGTTGTATCAGACTTTTTTGCAACCCCATGGACTATAGACCACCAGGCTCCTCTGTCCATGGAATTTCCCAGGCAAGAATACTGGGGTAGGTTGCCATTTCCTTCTCCAGGGGATTTTCCTGACCCAGGGATCAAATTCATGTCTCCTGCATTGGCAGGTGGATTCTATACCACTGAGCCACCAGGGAAGCACATATATATGTGTATATGTGTGTATACATATAACACAATCACTTTGCTCTATACCAGAAACTAGCAACCAGCACCATATTGTAAATCAACTATACTTCAATTTAAAAAATAATTAATAAATGTAAACCTCCTACAGTGTGCTCTCTGACCCAAGCTACTGCCAGGACCCTCAGTCATTGTGGTATGGCTGAATAACTCCCACAGTCTTTTTCTAGGACTTAGCAAATTGTTAGGACAAATAGCACAGTATTCTAGCTCCCCAGACTGTCCAAACCAGTTAGGAATCCCTCTGCTAACTATACAGCTCAGATACTCTGTTGCTGAGTTTCTTTAAATTATGTGAGGATTTTATTGTCTGTATCTAGAGCTCTGTGATTTGAAGGCACAGGAATAAGATGAGTTCTTATCCCACTGGGGTTTTTATTTTGTTCAAAATTAAAACAGACCCAAGGAATGGCAAGGAATGGCTTCTCTAGATTACGTCTTTGATGATTTGTGTGGTCTTGCCGAAGGCTGATACTTATAAACTCTGCAGGGTTTTATACACCTAAATTCTTTTTTTGGCAGTTCCTCTTCTGCCCAAATTCCTCAAGAATCAGTACAATGCGGGGGAAAATGTAAGCTTGGTTTAGTATCTTTGTAGTTTGTTTACATTTTAGACACCAATGCTTTAGAGTTAAGTAAATCAGCTGGGCTCAAGAGCTGGTCTGTAACCTTGGGAAAGTTACCTATGCCTCAATTCCCTCATCTATAAAATGTGGGCAATTGCATCTCTTTTCCAAGGTGATTTTCTTGAAATGCATCTATAAGGAAGTACCCAGAACAACACTTGGCACATACAAAGAATCCAGTACAGCTGCTCTTTTCTCTCACTCTCTACCTTCACTGCTTCCACTGGAATGAATATCAAAACCATAAAAGTAAATTGCCTATATTCAGGCAAAATTCTCTATTCTTATAGAATTCCTACTGAGTCTGTAGTTTTTCCTGAATGTTTTCAGGCTTGACAATACTCAGACATGATTAAAGGAACCCATGCTACATGAGTAACGTTTAAAAGCTACCTTTGCATCCAGCTTTGTCATCACGGGCACACCCTCTGGCTACTACTATACAGGGCAGGACTGAAACCAGTAAGTCAGTTTCACAGTGTTCCTTTTGACCAGCTTATTGGGCAATGGGGAAGAGTCTGAGAACTCTATACATAGGATCCTACCCCAGAGAGGTCAGCATTCCTCAGGGTGATTCAGCTACCATTATCCATTAACTTCACCCTGAAATCATTTGTTAAAGCGCTATTCTCCCAGAGTCATAAACCAGAATCCTGGAGGGGTCTGCAACAGTGGTTGGCAACTCCTACACAAGGGACAAATCTACCCCACTTCCTGCTTTTATACACCTAGGACCTAAAATTGAAAAACTAAAATAAAGAATAGTATTTCTTGACATATTAAAATTATATGAGACACAAACTTTGGTGTCCATAAGTACAGTCGTACTGGAACAAAGCCACAGCCATTTATTTGTGTATTGGATGCCTGCATGGTACAGGAGCAGAACTGAGTAGTTGCCACAGAGACTGTAGAGCCCATAAAACCTATATACTTCCTGGTCCTTTACAAAGTTCGCTGCCCCCTGACATGGGGCACAGACACCGGGAGCCAGACAGCCGCAGAGTTCAGCTCTCGCTGCCTTCCACTTGCCCAAGTTCTCCCATCTCCTTTGTATGCTAACCAATGGATAATGAGGCTTTTATGAGGGTCAAACAAATGTATAAAGTGCTTAGAAGAGGGTCTGGTGCATATTAAGTACCATAGTAAAGTAATGCTCAAAATTCTCACAGCAATATGTGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGGAAATTCTGAAAGAGATGGGAATACCAGACCACTTGACCTGCCTCTTGAGAAATTTGTATGCAGGACAGGAAGCAACAGTCAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTTCGTCAAGGCTGTATATTGTCACCCTGTTTATTTAACTTCTATGCAGAGTACATCATGAGAAACACTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCTCCCTTATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAGAGTGGAGAGTGAAAAAGTTGACTTAAAGCTCAACATTCAGAAAACAAAGATCATGGCATCCGATCCCATCTCTTCATGGGAAATAGGTGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGACTCCAAAATCACTACAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGTTATGACCAACCTAGATAGCATGTTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCATCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCAGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTTGATGGACGTGAGTCTCAGTGAACTCCGGGAGTTGGCGTTGGACAGGGAGGCTTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGATCTGATCTGATCTGATCTGATGGGTCTGTTACTATTCGCTGTCACAACTTTTTTCATAAACTAAGGCAGCAGCAGCATACCAGTTAGTTAGCAACAACTGTGAGAATTTATTTGTAGCCCTCCAATTACATTCAAGGGGCAGTAGGAAGGTATTAAAGACAACTGAAATAACAATGAGCATAGATGCTTATCCACAAAACTAGTTCTGCATTCTTAACAAATATTTTTTATGCTATATTTTTCTTTCAAACTTGAGTCTTAGAGAAGTTTACACTCACCTTTGAGTTCAGCCCTCATCATCTATTCCTTACAGTTGGAAGAAATAGACTTCAAAACAGAGACTAAGGAACAGAATAGAGCCCAGAAATAAATCCATGCATATATGGTCAACTGATCTTGGACAAGAATGCCAAAAGTACACAATGGAAAAAGGATGACCTCTTCAACAAATGGTCCTATTAAAACTGGATTAGTGCATGTGTGGGTGCTCAGTTGACTCTTTGTGACCCCATGGACTACAGCCCACCAGGCTCCTCTGCTCTGGGATTTCCCAGGCGGGAACACTGGAGTGGGTTGCCGTTTCCTTCTCCAGTGGATCTTCTTGATCCAGGGATTGAACCCACGTCTCCTGCACATCTCCTGCATTGCAGGTGGATTCATTTTTTTTTTTTTTTAAACCACTGAGCCACTGGGGAAAATTGGACGCTTGCTTACATGCAAAAAAGTGATTATTGGACCCTATTTCACACCATACACAACAATCAACACAAAAATCAAAATGGAATAAAGACTTAAATATAGGATCTAAAACTGTAAAATTCTTATTAGAAAACTTAAGGGAAAAGCTTTATGACATTAGCCTTGACATTGATTTCATGGCTATGACAGCAAAAGCACAAGCAACACAAACTAAATAAATAAGTAGGATTAAAAAGGTTCTGCACCTCAAAGAAACAACAGAATGAAAAGGCAACTCACAGAACAAGAGAAAATATTTGCAAGACATATATCTGACAAGAAGTTATTCTCTAAAATTTTAACAAAGAAGATATACAAATGCATAGCAGGTATATGAAAAAATGCTCAGTGTCACTAATTACCAGGGAAATGCAAATCAAAACCACGAGATATCACCTCATATCTGCCAAGATGGCTATCATTATAAAAAGAAAAAAAAAAATAGACAATAAGTGTTGGCAAGTATGTGGAGAAATTGGAAATCCTGCACATTATTAGTGGGAACTAGAAATGGTGAGGCTGCCATGAAAACAGTGTGGAGTTTCCTCAAAAAATTAAAAATAGAATGACCATATGATCTAGCAACCCTACTTCTAGATATATATCCAAAAAAAAGTGCGAACAGAATCTCAAAGAGATATCTGCACCCATATTCACAGCAATATTATTCACCAATAACCAAGATGTGGCAGCAACCCAAATGTCTATCTATACATGAATGTTTTTCAATGTGGCATATATCACACAATGTGTTGTTATCCTGCCTTAAAAAAGGATATCCTATCATATTCTGCAATGTGGTTGAATTTCAAGTACACTATGCTAAGTCAATTACAAGAAGACAAATACTGCATAATTCTACTTATATGAGGCATTTAAAATAGTCAAACTCATAGAAACTGAAAGTAGAATGGTGGTTGCCAGGGCCTCTGAAGAGGAAATGGAGAGTTGTTTACTGGTAGAGATCTTCAGTCATGTGAGAGGAAAAGTTTTGGAGATCTGCTCTGCGGCACTGTGGATGCTTTTAACAATAGTGCACTGTACACTCGGGCAGGAAGATTTCAGGTTGTGTTTTTACTACAACAAAAATACTAGGGAAAAAATAAAACCTTCCATATAGGCCAAAGGACTCATATCTCTAATCTACCTTGACAATGACTGTGGTACTTGAAAATAGGAATCAACTTCCTGAATCAAACACAAAACAAGTAATGTATAGTTGATTTTATATAGGACAACAGGAAATACTAGAATTTTTCTCACAATTCAGGACTTTCATTTTGAGGTTTGTGGGATCCAAAAGGAGAACTCGAGAGGGAAGTTTATACATGAGAGGAAAACAATGACCCTAGTGAGAACCCAGTCCACCACATGAGCAAGTCCTGTCCCACACACAGCAGGCGCTCCAATATTTGTTAAATGTCGATGACTCATTCAATTTTTCTGTGCAACCTCCATAGCAAATACTGTGAATCTTGCTTATTGTTACATTTCTTAAAACAATAAGAAATTGTTGAAAATTCAAAGAATTCTGCGTGATAGAAATTGCATGAAACAAAACCAAACCAGAAAATCTCACGTCTGAATTGCTTCAAACTGTTAAACTGGGTGAAAAACAAAGCTGTGATGTAAAGAAAACTGTTTCCTGAATCACCTGAGTGACACTCCAAGATCCAGCTCTCTTACCTTCCTGACAAGTGTGTTTTTTCACCAACACACTCTTTGCCTGCACTAAACTTTTCTTGCATAAAAAGTAGCTGGGTGATTTTGGAGTAGCTGGATTGTTTTGCCTGAATCATCCAGATAATTGGAACAACTCAACTTATAAGAACAATCCGGCCGAGGCTGCCCTGCCCAGTAAGTGCCTGCTGTCCTCTTCAGTTCATATCCGAGTCACATCCAGCTTAACCTTGAGATGACCGTGTCGCCTAGGAAGGAAACACACCGTTATTGTTGAGTGAAATGGTCAACCGCAAACCGACGCTCCAAACGCGCTCAGGTCCTGAAATTCACTGCTGATGTCCAAAGACACTTTCGCAGCTTGGTTTTCCGACGTCTCCTTTCCCTGAGAGCATCTCAGAGCTGCCCTAAGGCATTTGGCCCCTTCCCCCAATACCACACTTTGCTTCCAGCCCCGTAGGCCTGTCCAATAAATTTGTTTAAAATACAAAACGTAGCAGAAGATGCTCGAGCAGGAAGAGAAAAAGAACACCCGGCGAAACGGGTTGGTGTTGGAACGTGCCATTCGTTTTGAAGGGAGGAGAATCCCAGGTGTGAATTGCATCCCGCGTGTGAAGTCACTTACCAGACCTCGGGTTCTTCAGGGCCTGAAAAGAGAAAACACCAAAGACCGGGCGGAGGGCAGGAAGGGGCGGAGGCCGGGAGCGGAGCCTGGCGCGGGCGGCAACCTCAGGCGCGTACCCCGCGGCCCCGGGTGGTGCGGCCCTGGGCGGTCCCCGCGGGCAGGCGGGGAGGCGGGAGGTGCTGGGCTGCGGCGCAGAGTGCAGCATGGCGTATCCCGGGCATCCTGGCGCCGGCGGCGGCTACTACGCAGGCGGGGTGAGTACTGCTCGCGCGGGCTCGTGGCCTGGGCTCGATCCCTGGACGCCCGGGGCTCCGAGAAGCCACACGGGGCATCTCGGCCGGGGCGGCTCCCAGGCGCCCCCGCCCTGCCCGCTGCGTCGCCCAGCGCCCCCGCCGGCCGGCCTCGGTCTCCGGCGACCTCCTTCCTTCTGTCCCTTCTTCCCCCTGGGTTGCTGCTTGGGGCCGGGACGCGCGTAGGTTTGACCCAAGAAGCCCACCCTGTGCCTCCCGGATCCGCGGCGTGAAATCGTGCAACTGGGGTGTTGCCTTCAGCTTCGCCTTCCCTAAGAGCAACAGCCATTTTAATCTAGAATGGTCCTGCGATCCACTTCTCTCTCCTAAATTGAGAAAAACGGGGAAAGTCAGGGGAAGTCCGCTAGAGTCAGAGACTTCCGGGAGGAAGGCAGCCTGGCCCTGAGTCTGGGACGGGCATCCTTTTGGGAACTATTTCCTAAAAAGAATATTCCCTAGCCGTGACAAACCTCACCCTCCCGAGGCTACACCTGTCTCCGAACGCTTTAAAAATACCATAAACGCTAGGGGAAAATATGTAAGACAATTCTGAGCCCTGCTGGTAAGTTGCATGGCCAGGTTGCATTCATCTCAGTAAACTGCAGGTTAATGGGGATTTGCAGAGGTTACTTCATTTATGCTGATGTCATTGTCAAGACAACTAATTTTGATCCTAGCTGCGGGTTTTTAAATTATAACTGGGGTGAGAATGGGAGAAAGGGGAGGAGTGATTTTACGTAGAGAGTTAAGGGAGGTGGGGGGGAGAGGAGCAAACGACTGACAGTGAACCTGACTTTGCACAAGGCACTCTATGGTGAAAGAATAAAACTTGGTCATCGGATTGATGCGTTTGTTCCTTGTCTTACAG
Seq C2 exon
TACGGAGGGGCTCCCGGAGGGCCTGCGTTTCCCGGGCAAACTCAGGATCCGCTGTATGGTTACTTTGCTGCTGTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010390:ENSBTAT00000053811:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]