HsaINT0158967 @ hg38
Intron Retention
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:HGNC:11292]
Coordinates
chr7:88218859-88220079:-
Coord C1 exon
chr7:88219976-88220079
Coord A exon
chr7:88218943-88219975
Coord C2 exon
chr7:88218859-88218942
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
ATGTGTTTCCTGTTTCACAGTAT
3' ss Score
8
Exon sequences
Seq C1 exon
GGGCGGAGAGGCCTGGCGCACAGGGCGAGGGCGGCTGCGGCGCAGTCTGCAGCATGGCGTACCCGGGGCATCCTGGCGCCGGCGGCGGGTACTACCCAGGCGGG
Seq A exon
GTAAGTGCTGACTGCGCGGGATCGCGGCCCAGGCGGCTCCGGGGCGCTAAGAGGCCACCTTGGAGATGCTGCGGCCAGCGGGGTGAGGCGCTGCTGGGCGGCTACCCGGGCTCCTTCCGCCCTCGGCTTCTCCCTGCGCTCGCGGCCTCGCCCTAGGCCCCTGGGGTTCGGCCTCTCCCCACGTTTCCCCGTCCCTTCTCCTGGATGGCCCTGCGGGGCCAAGGTGAGGGTGGATTGGGACCCTAGAAGCCCACCCTGCGGCTTCTCGGATACGCGGCGTGAAATCGTGTTAATTGGGTGTTGGCTGACCCCCACCCCACCCCACCCCCGCCTTCTTGGTTGCCTCCCAGAGCAACAACAGTCATTTTATTCTAGAATGATATACCTTCCTCCCTTTAAAAAACAAACAAACAAACAAACAAACAAACAAACAAAAAACGAGTGAGAAGGGGGACGGAAAAAAAGGGAAAACCTGCTGAAGTAAAAGACCTGTAGGAAGGCAGCCTCGCCGGGCGTCTGGGATGCGCGTTGTCTTGGGAACTGTTTCCGAGACAGGCAATGTTCCCTCGCCACCCACGAGATACAGCCCGGCCGGACACCTTACTCTTCCCTAGGCTACACCCGTCTCAGAATGTTACCAACTCCAGCCTTCCATCGTTCATAAAACGCTCTTAAAATACCATAAATGCTGTAACAACAAAAGGAGAATTTGAAGCCCTGCCATTCGTTGGCTTACCTAGTTTGCACTCACCTCAGTAACCTTCAGGTTAATAGGGATTTTAAAAGTTGCTTTACATATGTAGACATCACTTTCACAGCAACTCTTTATGGTCTAAGTCGCCAGTTTTTAAATTACGGGGTGTGAATGGAAGAGAGGGGTGGAGTGTTGGCAGAGTGTGCCCGGTGGTGGGGAGGTGAGCCTTGTGAAGGGCGGGCAGGCGGGCAGTTGTCTGGCCTTGCACAAAAGCCCTCAGTGGTGAAAGAAGAAAACTTGATTCGGCAGAATGACGTGTATGTGTTTCCTGTTTCACAG
Seq C2 exon
TATGGAGGGGCTCCCGGAGGGCCTGCGTTTCCCGGACAAACTCAGGATCCGCTGTATGGTTACTTTGCTGCTGTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142:ENST00000265729:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134051=EF-hand_6=PU(29.0=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains