HsaINT0158967 @ hg19
Intron Retention
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:11292]
Coordinates
chr7:87848174-87849393:-
Coord C1 exon
chr7:87849291-87849393
Coord A exon
chr7:87848258-87849290
Coord C2 exon
chr7:87848174-87848257
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
ATGTGTTTCCTGTTTCACAGTAT
3' ss Score
8
Exon sequences
Seq C1 exon
GGCGGAGAGGCCTGGCGCACAGGGCGAGGGCGGCTGCGGCGCAGTCTGCAGCATGGCGTACCCGGGGCATCCTGGCGCCGGCGGCGGGTACTACCCAGGCGGG
Seq A exon
GTAAGTGCTGACTGCGCGGGATCGCGGCCCAGGCGGCTCCGGGGCGCTAAGAGGCCACCTTGGAGATGCTGCGGCCAGCGGGGTGAGGCGCTGCTGGGCGGCTACCCGGGCTCCTTCCGCCCTCGGCTTCTCCCTGCGCTCGCGGCCTCGCCCTAGGCCCCTGGGGTTCGGCCTCTCCCCACGTTTCCCCGTCCCTTCTCCTGGATGGCCCTGCGGGGCCAAGGTGAGGGTGGATTGGGACCCTAGAAGCCCACCCTGCGGCTTCTCGGATACGCGGCGTGAAATCGTGTTAATTGGGTGTTGGCTGACCCCCACCCCACCCCACCCCCGCCTTCTTGGTTGCCTCCCAGAGCAACAACAGTCATTTTATTCTAGAATGATATACCTTCCTCCCTTTAAAAAACAAACAAACAAACAAACAAACAAACAAACAAAAAACGAGTGAGAAGGGGGACGGAAAAAAAGGGAAAACCTGCTGAAGTAAAAGACCTGTAGGAAGGCAGCCTCGCCGGGCGTCTGGGATGCGCGTTGTCTTGGGAACTGTTTCCGAGACAGGCAATGTTCCCTCGCCACCCACGAGATACAGCCCGGCCGGACACCTTACTCTTCCCTAGGCTACACCCGTCTCAGAATGTTACCAACTCCAGCCTTCCATCGTTCATAAAACGCTCTTAAAATACCATAAATGCTGTAACAACAAAAGGAGAATTTGAAGCCCTGCCATTCGTTGGCTTACCTAGTTTGCACTCACCTCAGTAACCTTCAGGTTAATAGGGATTTTAAAAGTTGCTTTACATATGTAGACATCACTTTCACAGCAACTCTTTATGGTCTAAGTCGCCAGTTTTTAAATTACGGGGTGTGAATGGAAGAGAGGGGTGGAGTGTTGGCAGAGTGTGCCCGGTGGTGGGGAGGTGAGCCTTGTGAAGGGCGGGCAGGCGGGCAGTTGTCTGGCCTTGCACAAAAGCCCTCAGTGGTGAAAGAAGAAAACTTGATTCGGCAGAATGACGTGTATGTGTTTCCTGTTTCACAG
Seq C2 exon
TATGGAGGGGCTCCCGGAGGGCCTGCGTTTCCCGGACAAACTCAGGATCCGCTGTATGGTTACTTTGCTGCTGTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142-SRI:NM_003130:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF111973=DUF2835=PU(25.0=32.1),PF134051=EF-hand_6=PU(29.0=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)