MmuINT0152366 @ mm10
Intron Retention
Gene
ENSMUSG00000003161 | Sri
Description
sorcin [Source:MGI Symbol;Acc:MGI:98419]
Coordinates
chr5:8046078-8057621:+
Coord C1 exon
chr5:8046078-8046215
Coord A exon
chr5:8046216-8057537
Coord C2 exon
chr5:8057538-8057621
Length
11322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTCTTTTCTTTTTCACAGTAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
ACTGATTGCCAAGGATCAAGGGGGAAATGGCTGTTAAGGTTTAGACTTCTTGATTCTACAGTTGTAAGGTCAAGGAGCAGGCACACAGGCCTCTAAGAATCACCACTTCCACCTGAAAAGCCTCACTACAAGATGCAG
Seq A exon
GTAAGTAAAACCACGAATTTAGCACAAGACAGTTCCTTACGACTCCTATCTCCAATTCTGCTACCAGGATGAAAGGGTTCTTAACACTGTGATCCTAGTGACACATTGTTTCTCAGGCAGAGTGTCTGCAAAGTTTATTTCTATAAAATACTTTCTAAGGGATCTAGAGAGTGGCTTAAATGTAAGAATAAAGCCTAAATTGAACAATTATGGAGAAGAAAATTATTTTAAAGTGAAAAAAAATGTATTCTCACCCTTGGCATTTCCACTGAGAAATGTAGGAGAGACTCAAAGAATCTTGAGCTGTGTAGATCCTTGGTTTCAAAAGAATTCAGGTTTCTCTCTTCACTTGAAAGTTCCCCTTGTCATTCTAAAAGATAGAAACAGTCCTGGCTCCTTCATGAGACAACAGTTCTAGCAAATCTACTAAAGCTTGCACTGTAAGTAAAGGTGATGTGTCTCTTAGCTCTGGTGTGTTTCAGAGGGAGGCAGATTTACTTTTTGTAGAAGCTTAGCTGTCTATTTGTTTTCATGTATAATGTTCTAGTATATATGTTGCGTTCAATTTTATCTCAACTGGAGCTTTGCTTGCCAAAATAGTAATACTGTAATTTCTGGCTTCTCAAGCAAAACGAAGAAATAAGATCAGGGTAAGTTAACCATGAATCCTTTTCCAGCTTCACCGTCTCCCCTACAGATGAAAACAGGCAAGGGACTTCTGGAAAACTCTATATAAGCTAAGAAATATCTTTCTTTTTCTTATTGCTAGGAATGGAACCCAGTACTTGACACGTGATAGACTAGCATCCCACTGTCTGTCAAAAAGTACCTCATTTTTGTTTTAAAAATAACTTATTGCTCAGCCCATACAATGTTACTTGTATGTACATGATTTCAGAGCTGACCAATTGATATTACATAGCTATTTGGTATTCTTTTCCCTGGGGAAGCCTTTCTCCCATTCTCAGCATTTCTCAGTTGCCTTTTCGGAATTCTTTTTTTTTTTTCTTAATTAAGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTTCCCCAGACCCTCTCCCCCCACTCCCCTACCCACCCACTCCCACTTCTTGACCCTGGCGTTCCACCCCCCGCCCCCGTACTGAGGCATATAAAGTTTGCAAGTCCAAGGGGCCTCTATTTCCACTGATGGCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACAAAAGCTCCGGGAGTACTGGTTAGTTCATAGTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCACCATTGTGGGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCTGGCATAGCCTCACAGGAGACAGTTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTGTATGAAATGGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATCCCCGGGTATGGCAGTCTCTAGATGGTTCATCCTTTCGTCTGAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAGTTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCTTCTTGGAATTCTTTATCTAGGATTCAGGTTTCCCCCTTCCATGTTAGCATGTCTATTGGTGTGTCCCCTTCTCTGTTCCTGTGCCTATTGGTGAGTTATTGTTGTTCAGGTCTTGTTTAGGCAGTAATGTTGGTGAGACTTCATGGGCATAGATTCTCTGACATTTATAGGAGATGCAATCTCACAGAATAGTTCCTGTTCCTCTGACTTTAAGAATCTTTCTGCTCCCCTTTTGGAATGATTCCTGAGCTGAAGTGAGGTATTTATATATTTAGCAGGGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAAATAAAAATTAAAAAAAAAAGGCCATGAATTTGAGAGTCAGCATGGCTGATTTACATAGAAAGTGTTAAGGAAAGCGAAGGGTGAATGGTGTGATTATATTACATAATTCCAAAAAATATTATTTAGAGAAATGCAAAAATGAAAAAGTATATATGAGGCTGGAATTCTGGGTTACAAGCAGTTACTCTTCCTTCTCTAGAGCCATGGTTCGAAACCTTCCTTTTTTTTTTTCCTTTCCCACTCATACCACTGTCCCCCACATCAATGTCTTCTCCCCTTTCCCTCATGGCCTGGTTTATCACTTCCCTTCTGACTCTGTACTGACCTTGTGACATCAGGATTGACAGGATACACTGACTAAGGTGGTGATAGGATACTCTCAGTCCTCCTTCCCCAAGTCTATCCTGGCTCTGGGCTTGGCCTTCCTCACAGAACACTGAGTGTCAGCCTGGGAAGGAGGTGAGTACTCTTTTGGAAGGATGCATCCTGGTTGCAGACAACCTGTGGACAGAAACCAGCCTCCTTAAGGGTTCACTGTGTACAGCAGACCAAAGTTAGGAACATTAGTTCTCATTCAGCGCTGTTGCTGAACACAAGCAAAGTTTTACGTAGGGTTAGAGGCCAGCACGCAATTCCTCTCTCTCCCTTGTTGGCAAAATGTTTTTGTACATTGTGTAAAGTTTACCCACATTTGTATTATCTCAAATGCTGATTTCTTTATCCCATTATGTGGCTTCAATCTGGACATGGCTTTGCTTTGTTTATTCTTAGAAGCTCCTTTCCCAACTTTGTATAAACATTGCTCCTCATTCATTCTCTGCCTTGCCTTTAAAAGCCAACGAGCCAATACAGAGCTTTAGAGAAAATAAGGTGGGACTTCCGATTCTAGGACGGGTGGAGAAATAGGCAGGCAGGAAGGAGGGGAGCCACAAGGAAAGGACAAGGAAGCATCAAGAGAAGAGAGCTGGAACAAGAAAGGATGAAAAAATGCAAGTAAATAAGATGGGAAAGTTGTCTGGGAGGAAGCCTGGCTAGCTTGGCGGTTTAGAATGGAGTAATCATTGCTTCAGTGTTTGGCCCAAGGCAATTGTAATAAATCGTAGTCTCTCTGGGTGGTGATTTGGGGAATTAGCTGGCTAATGAATAACTACTGATGTACTAATATCATGAGTCTATATTAATATAATAATCATTCAACACTCCCTGGTCCCAAATATGATGATGGCAGCATGCATAAGCTGTGGACGCTTAAGTCTAAGACCATCCCACCCCAAACACAGATAACCCAGTCTGATCACAGTAACAAAGCAGATCTGCTTATTCCTTAGAAAATGAGATAGAGGCACACAATGGAGCATAAACCTGGTTTATAGCCAGTTCTAAAAAATTTTTATTTCTCCACCTCCCTTTAAGCGTATTATAATAATTAATACTTTGTTCATCAAAGTAATGGACTACCCTAAAATGGACCCTTATAATTGATAGTAATATACCTCATTAGGTGTCCCTTGCTTTGAACAATTGCTTCAAATGTAACATTCTGATTTTTTTATGGGAAGTCTTTTCCGTTTACCTTTTCAATGTTTTATTGATTCTTTTTGAGTTTTACATCATGCACCCCAGTCCCACTCCTCTCCTCATCTCCTCCTATGTGGTCTCTGTCCTTGCAGCCTCCCTGACAAAGGAAGTTAAACAACAAACAAAGCATAGAAAACATCTCATCATAGAAGCTGTAGTGTGCCAATGTGTCCCATAGTATATTTCTCTGTCCAAATATCTTCACTTGCAAACATTCATTGCAATGTGTCATTGGTGTGGCTAGAGGCCTCGGGCTTCTGCCACACCATCAATATTGCATTCTTAATGGGACTCATGCAAGTTATCTGTGGTTGCCCTTCAGTTTTGACTGAGCAGGACTGGTCCTTTCATGGTGTGTCTAGCCCATCAATGCCATGTGGTTGCAAGTGGGTTCCTGGGTGTGTTTCCCTGCCCAATGGCAGGCAAGTATATGGATGTCTTCCTTCTCCCACACTGCAGTTGGGCCCCTATATATTGTGATTTCTAAAATATATTCTTTTGAAGAGTAGTTGTCTTTGGCCTTCAGTTACATAGGAAGTCCAGACTCCACCCCCACAGTTACCTGGCAACAGGCAGAATGGCCCAATCCACTATAAAAGGAGCTGCTTGTCCCCTCCTTGCTCTTATTCTCGCCTCCTGCTCTCCTCCTCCCCCTTCCTTCCCCCCTCTCTCCACATGGCCATGGCCTCCCTCTGCTTCTCTACTCTCTCCCTCTCTCTTTCTACAATGAATGCCTTAAAACAAAACAAAAAAAGTAGACTTTTTTCTCAATTCTCTCTCTCTTTTTTTAATAAATTTTCATTTTTAATTTTGTTTATTGTTATCTTTGGCATGTGTGTGTGTATATATATATATATGTATGTATGTATGTATGTATGATGCATGTGATATGAGGGAACATGTGTATCACAGTAGATGTGTGGCCATCAAAGTACAATTGGGAACTAGCTTTCTCTTCCCATCTTTACATGGGTTCCACAAACTGAACTCAAGTCAACAGTCTTGACCAGAAAGCACCTTCACCTACTGAGCCACCTCGCTGGCTTTCTCCTCAATGATTAATCTGGTGGACCAGAAAAACCATAGAAAGAAGAGCCCACAGTGTGAACTTGGGAAGAATGAAACACCTTGCTTGCTTCTGCTAGTGTGATGACTGAGAACAAGCCCCAGGACCCTGGGTTCTTCATTTTGGAAAGTGGGAATTATCTAATAATGTAACATGGGGGCATTTATCACCAGCCATTGCTGTGTGTTTTGTAATGATAATTTATCTCACCTATATTGGCTATTCCAGGCAAAATAAAGTATACTAGCTTTCTCTGAGATCCAGGGAAGACAACATATATGAAACTGTTCTTATACCACCCAACAAGGGAATCACTAATTATTAGTGCTATTTAAATTAAAATCTTAGCTCCTTGCATCACATGTTTAATAGCACACATGGTTAGCTGTGGTTAGTAATAAGGCATCACCTATAATGTTCTGAGGAGCCAGTGTGCACTGCACACAGCACTATAAACCATCCATGACAGAGGTTACCATTCCATAAACAAAATTACAACACTGACTGAGCTCTGTTAGTGGCAATGAGCCAAAGGTCATCTTCTATTCAAAAATACTCTACTGTTCGCATCCTTTCCCAAGAACTGAAGAAAATGGGTTTGTTCTTAATTGCCCATCTTATTATTGGATACTCATTCCTACTCACACTCAGAGATCTAAGTTTTTCCATGATTGCATAATATGAGCTTTTTTTTTTTTTTTTAATTTCCTTCTCTGTTTTGTTTTTGTTGTTGTTGTTATGTGTACTTGGTGCTGAGGATAAAAACCAGGACCTGTGTTCACTATCCAAGTGTTCTAACACAGACTTATCTGCCTGCCCCAGACAGAAGTCTTTAGCCATCAAGTTGACTCATCCAGATTACAACTAAAAGAAAGCTGCGTCCTTACGCTGGCAAATGCATTGTTCATTTCTTCCCCATACACTAGACCTGTGATTTAGACAAGGGCAGGAAATGGTGAAATACCACAGTTACATGGAGACACAGTCCCTTTCACCATTGTATAAATAAGAATGTTGTGCCTGAATGTTATATATAATGTACATGTTAACCCTGCTTTAGGAACTGGGTGTATCTGTTACCTTTTGTTTTGAAAACATGTCTAGACACAGGTCTCAGAAGGAATATCAAAAAAAGAATAGACTCCCATCTTTGTTAGCTTTCTATCACTGTAACAAAATACCCAAGAAAAACAACTTACAAGAATGAAAGGTCTATTTTTGCTCACCACTAGAAGTCTCACAGCTCCACTGTTTTTTGTTTTTTTTGTTTTTTTGTTTTGTTTTTTTATTGTTTTGGTTTTTTTTTTTTCCCTGATAGTGAGATAGAAGATCACTGTGGAGAGTGTTACTGTGAAGCAATCTTATCCCCGGATGACTGAAAGGAAAAATATCAGCTCAGTCCCCAAGACCAAGTTCTCAGCACAAAGGAGATTGATTTGCCCCAGAGAAACAGAGGGCAGGGAATAAGAGACAAAGACAGGAGGACTAGGGAGATGATGAACAAGGGAGAGAGGGAAGGGGCCTTTTTTCTCTAGGACCAAGATTGTCTCTTGATAGAGAGGAGACAGACATGGTCCATAGGCAAATGGTGGTTTCTAAAGGTACAAGGTAAAGGTAAATGTAATTTAATAGTTTTCAGCAAGGAATTGAGAGAGAAGGGCAAGGCCTGCCAGAACCAGGCTCTGCACACTTGAGCTGTCCAGAGTCCCTTCAATGACCAGGGTGGCAAGCAGAGAAAGCAGGGGAGGAGCCAGGGTCCAATATACTCACAGTCCTCAGTGACTCAATGTCCTTCCTCTCAAGTCTCACCTCTGAGATGCTGCCCCTGCGCCCTTAGGTAGCACTGCAGGTTGGAGGTCAAACAATGGCCTTTGGAGGGGATTTAAGATCCAAAGCATAACATCTCCTAAGAGAAAAAGCCAAATCTGTCAGGGCTTTTCCTGGGAAGGGCAAAATGTTTATATTCAGCTAGGTCAGCCTTCAGGAATGTGGCCCACTCACTGGTCTTTTCTTAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTGTAAAACAGTGTGATTAGCCAAGACATCACGAACGTTCTCTCTAGAGAACCGATTTTCTTCTAGGTTTAAACTTGAAACAACTCTCCTCAGCCTCTTTTAGCCACAGCCTTCAGTCAGGGAGACATGCCTGAAAAAAATTGTGTAAAACTTAGTACATTGTTTTAGAATGAATGATAGTATTCTGGTTCCCATGAGAAAGCCCTCTTCTGTATAAATACACAGCATGGTGCTCTGTTGCTGAGTTTCTTCAGATGGCTCATGGATGGCAGTGCCTGTATCTTGGACTCATAGTTTGGAGATATAGGGCTAAGAAGGTGATCTTATTCCACTGAGGTTTTTAATTTGATTCGAAATTAAAATGACAGAGGGTCGGGGCGGCTGTCATCTTTTATAGGTCCTACTTAGGGATGAGGTAACTTGATCTTGTGAAGGCAGACATGAGGATTTTTGTGAAGTTTCTCTGTCTCTTGGGTTCTTTTTCTGTATTGTCCTAATGCTTCAGGAAGTTCTCCCCTAGGGAAAAGCATGAGTGTAGCTTAGTGTTTTATAGTCTGTTTTTTATTGTAAAAACTTAGGCCTTCAACTTACATTGAGAGTAAAAGCCTGGTAGGACACCTTGGGAAAGTTACTTGCTACTCAGTTCCCTAATCTCTAAAACACAATTACAAATTCCTCTGATAGTGTAGTGTCATAAGGAAGCGTCTAGCATGACACTTGGCACATGCCAAGAATGTGAGAAGTTGCCTATTTCATTCCCTCTCCACGCCTTCTGTGAAAATAAATACGAAAGCCATGAAAGATGATCACACTTCAGCTTTGCAATGGTGATACTGAATCTTTATCCTTTGCTTAGGTTCCATAATCTTAGTCTGTGAATAACAGGGTTTGTGTCGCATGCATAAACATTGAAAGGATAGCCTGTCATACGACATATGCAAGCCACTCTTGGAGAGTACACAGGGTGGGAGACAGGCAAGCCATGGTCTCACCCTGTTCCTCTCACATGTCTCACTGACCAATGGGCAGATTCCGACGTAGCCATTTTAATCACAGGCTCTTACACTGGGGAGTCACCATTCCTTGGTGTGACTCATCTACCAATACAGTAGACTTTATCCTAAAACCAGCAAAATTGTTTGCTAAGGGCCATACTTCCTGAGTCATAAGCTGGCCGTGGTTCACAAGTTGCTCCCTGAGGGCCACATCTGGCCTGCCTCTTTGGGAGAACATCTGAGAGCTAGGAATGACATCTCTTCCTGTCTTTAAAAGATAGGAGGAATAGAGTTATTCTGACATTCAACAACGATATGAAGTTCAGTGAATGAAGTTGCTCTAGATCACAGTCACACTGTTGACCTGTGTTCTATCCTTAGACACCACCAGGCTATGAGAGCCAAGAAGTTGCTATAGGGAGCATGTGATGGAAAATATTTACTATCTGGACATTTTCTCCCCCATCCCCACCTCCACCCCCACCCCGGGGGCGGAGCTAGAGTACCTAGCACCATAGCCCAGCTCTGAATTCATATCCTCCTTTCTTTGTCTTGTCTCAGCTCTCGTTTCTCAACTGCATAAAACTGCATAACAAAAGCGCCTATCTCACAGGTCTTTGTGAGGACTACACAAATAGGCAAAGTTTATGAAGGTCTGACACTCATTAATTACTGTGTGTGTGTGTGTAATTTATCTTTGTTTTCATCATTAATTTGTTGGCAATCGCTGTAAGGATTTCATTTACAGCCCTCCATTAAAATTCACTTCTTAAGGGAGGAGTAACCAGAGTCTAATGTCTCCTAATGTGACAATTAATGTAGTCGCTTATCCATAAAATGAAGCCTGCATTAGTCACAAATGCTTTATTGGTGACACATATTTTTTGTGATATTTTCAAACTCGAGTCCTGAAAGAGCTTAAATTCAAGTGTGAGTTGAGCCCTGTTCACCTAGCCGATTAAAGTTCCAAACTACAGGACAAAACCTCAGAATGCCTAATCAAAGACCATGGTATTTGAGAACAGTAATTTTATCTCCAGAAGCAGACGTAAAACAGGCTACACCTTTGCTACGTGATCACAAGGACTATTGGAATTGTTTCTCGCTATTTAGAACTTTCTGTTTTGGAGCTTATGTATCCAAAGAGAACTTGGTCACACACTATGGTCAGTCTTGTTCATTAAAGTGTTTCTCAAAATGTTAAAAACAAAACCAAGAGCGGAAGTGCCCTCCTTTCCTTTCTGCTGGGTACCGCTGCCTGCTGTCAAGATGGGCAAGTTCATGAAACCCGGGAAAGTGTTGCTGGTCCTGGCCGGATGCTACTCCGGTCGCAAAGCCGTCATCGTGAAGAACATTGACCATGGCTTCTTGGACCGCCCTTACAGCCATGCCCTGGTGGCTGGAATTGACCGCTATCCCCAAAAAGTGACAGCTGCCATGGGCAAGAAGAAAATCGCCAAGCGATCCAAGATCAAGTCCTTTGTGAAAGTTTATAACTACAACCACCTCATGCCCACAAGGTACTCTGTGGATATCCCCTTGAACAAGACTGTTGTCAACAAGGATGTGTTCAGGGACCCAGCTTTGAAACAAACGCAAGGTCAGGCGGGAGGCCAAGGTCAAGTTTGAGGAGCGATACAAGACAGGGATGAACAAATGGTTTTTCCAGAAGCTTCGCTTTTAGGTATATTTTTGTTTCGTCATTAAAAATAAAAATAAATTAATAATAACAACAACAACAATAATAATAATAACAATAAAGCAGGCAACCGTTGGTGACTCTCATCTGGGGCTGAGGCCATGAGAGGCTACCCTGAGAACCTGGATCTCAAAAGGAAAGAGTAAGAGCAAACAGTCAAAAGCAAACAAACAAAACATCGACCAACCAACACTGTTCAGTCCTTAACAGTCCGGAGCCAGCAAACAATTACCTCTTGTTGCAATTGCACCAAAAAACAAAAAAGAAGCCGTGAAACATCTGAACAACCCACGTGAGTTTCACATCCTTTCCAGGAAGCTTCACCACTGGGGTTGTTTCTATTCGAATCATCCAGAAAATTAAACAATTCACTTTCCTATGAATGACCTGGGTGAGGCTGTCCTGCCTAGAAACTGCCCTCTTCTACCCCACCCCACACACCCACGCCTAGCAATCGCACCTGAGCTACACTCAGCTTAAACGGTTGGCAAAGAAACAGGCCACCCTCAGTCAAAGCTAAAAGCCCACTTGCATGGTTCAGAAGTTTTCATCAGGTTTTCAAAGTTTTTTTTTTCCTATTTTGTAAAGTGTCTCCTTCGCCCACTGGAATTGTTCTCCCCTTCCCTACAGTTGTGCATAGCGTTCTTATCCCGTCCTCTCTACCCAACAACCCGGTGTAAATAGTAAATGTTCTACAAAATAGCACAGTAGGAAGAAGGGGGGAAAAAACCCTCCCCTAGCTGTGCGTGGATGTCGGAATGTGCCACTAGGTCGAGAGGGAGAATGGGTCCTGATATAAACTCGTCTGGGGTCCTGGGTCATCGCCCGAGTGTGGGTCGCAGACGGCGCTGACACAGCACAGAGGCAGCAGGGAACGGGCGGCACTCGGGATGCCGCGGGGCGATCGGGGTGGGTGGCGGCGAGCGGCGGCCCCCGCGGGGCGGCGTGGTGCGCTCCGGGGCGGCTCTGGGCCGGACGGGCGGAGCAGCAGACAGGCAGGGCGGAGGCGCAGTCTGCACCATGGCGTATCCCGGGCACCCTGGCGCGGGCGGAGGGTACTACCCAGGCGGGGTAAGTGCAGCGGACGAGGGCACAGCAGCCTCTGGTCTCCCGAGACTGGAAGGCGCCACGGACGAGCGGGAGGAGGCGTCGCGGGCGGTCCCAGATGCTCCCTGCGAGCTCGCCTGGACCCTGATGTCCAGCCTTGGCTCCATTTTTCTTCCCCATCTCTTCCAAGGGCCTTTCCAGGGCCCACCGGTGGGTGGGCTGCGACCCAGGAAGCCCATTCTGTAACTCGGATATGTGGCGTGAGATAGTGCAAGTTGGTGTTGACTTCCTGCTCTCTCGGAATGTCCCCAAAGCAACAACAGCCATCTTGATCTAGAATGGTTCTGTGGTCACTCCCTTGAAAAGAAAGTGACAGGGAGACCAGAAAGTCTGGAGAAATGAGCTGAAGTCCTAGAGGAAGACCACTTAGGCAGATGTGGGAGGTGTACTGTCAGAGACAGAGGGACCCTCATTTTAGATATAACCGGGCCGGCCATCCCTGTTCTTCCCAAGCCACACCTGTCAGCCCTGTACTAACTCCAGCCTTACTTAGTACTTCAAGTACTTCAAAAACACCGCAAAGGCTGTAAAAACCAACAGGAAAACAGTCCTAAGCCTAGCCACCAGGTTGCTTCCGGTGCACTGACCTCTGTAAGCTGGTTAATAGGGATTTTTAAAGTGGGTCTGCGTTTAGTGGCCATCACTCTCATGAAACTTGTTTTGGACCAAGTCTCCAGCTTTTAGATGTCAGGAGCAGGAGTGGACAAGCCTGGTGGGTCACTGAGCTGAGTCAAGGTGGTGGGGAAGATAGAGACTGTGAAGGTCGCACAGGCGTCAATTGTACAAAAGCCTTGGATGGTTAAGATAAATTCAATTCTCTCTGATGCCTTTACCTTTTTTTTTTTTCTTTTCTTTTTCACAG
Seq C2 exon
TATGGTGGGGCTCCCGGAGGGCCTGCGTTCCCTGGACAAACTCAGGATCCGCTATATGGTTACTTTGCTGCTGTGGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003161:ENSMUST00000088786:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134051=EF-hand_6=PU(29.0=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types