GgaINT0095070 @ galGal3
Intron Retention
Gene
ENSGALG00000008985 | SRI
Description
NA
Coordinates
chr2:20932671-20933672:-
Coord C1 exon
chr2:20933613-20933672
Coord A exon
chr2:20932755-20933612
Coord C2 exon
chr2:20932671-20932754
Length
858 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TTTCTTCTTGATTTCTAAAGTAT
3' ss Score
4.5
Exon sequences
Seq C1 exon
GAGCAGAAGATGGCGTTCCCCGGGCAGCCGGCGCCCGGCGGCGGTTACTATCAGGGCGGG
Seq A exon
GTGAGCGGGGCTGAGCCCGGGCGGCGGGCGGGATGAGGGGCACGGCGCCGCGGGGCTCTCGGTGAGGGGCGGCGGGCCCTGGTGTGGGGCGGCACGGCAGGATGCGGGTCCCGCGAAGTAGGAAGGAAGTAGCCACATCACCCCCTGGGCGGAGAGGGTAAAATAGTAGCAAAGAGTACTCCAGAGTCGAGGTTGCGTGATAGACGTGCTTTCAGGGTATGTAGGAAGGCTGCTCCGAAAGTAATGCCTCCTCTCTTATTCTGCTGGCCCACGACGTCAGAGGCGGATGTTGGTGGTATGGCATAGAGATGGAACCTTCCCACCGATATTCCGTTACATGCTGTTGCCGTGTGGCAGACGGCAGCAGAGGAGCAAGGCTGACAGAACGGCATCTGACATGAAGTGCGGATTGTAGCAAAGGTGTGGAACTGAATTCCTCCATGCGGAAAAAAATGGCACCCACTGACATTCACTGACACTTAGTGGACGTTGGTGGACATCAAACAGTGGATGTGAGCGCAGTGAGGCGGTGGCGGTGCATTTCAGCAGTGGTGACAGCAGCAGTGACCTCAGTGGAGCATGCAGGCTCTTGTTCATCACTGGTGAAAATACACAGTTAATGGCAGTGACTGTGTTGAAAAACGGTATTTTGTAGCTGAGAATTTGCTCTGTCAAAGAGTGTTATTGTGCTCTTTCTTTCTGTTGTAGCTTCCATGGAAACAAAGAGGAGGCATTACTTTCAGAGCGACCTCCGTATATAAAAGCAGAAGTTGATTCTTAAGTACAAATGTTATTATTTCATACACTTGGCTGAATCATTACTTCAAAATTAATACATTTTCTTCTTGATTTCTAAAG
Seq C2 exon
TATGGAGCAGCTCCAGGAGGCCCATCATTCCCTGGACAGGCTCAGGATCCTCTGTATGGTTATTTTGCTGCAGTAGCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008985:ENSGALT00000014615:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]