RnoINT0143471 @ rn6
Intron Retention
Gene
ENSRNOG00000049780 | Sri
Description
sorcin [Source:RGD Symbol;Acc:1584485]
Coordinates
chr4:23017925-23018983:-
Coord C1 exon
chr4:23018871-23018983
Coord A exon
chr4:23018009-23018870
Coord C2 exon
chr4:23017925-23018008
Length
862 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTTATGTTTCTTTTTCACAGTGT
3' ss Score
9.53
Exon sequences
Seq C1 exon
GGGGCGGCTCTGGGCCGACGGGCCGAGCAGCAACCACACAGGGCGGAGGCGCAGTCTGCACCATGTCGTATCCCGGGCACCCTGGCGCTGGCGGAGGGTACTACCCAGGCGGG
Seq A exon
GTAAGTGCAGCGGGTGAGGGCACAGCAGCCTCTCGGCTCCAGGGACTGGAGGGCGCCACGGACGCGCGGGAGGAGGCGCCGCGGGCGGTCCCAGACGCTCCCTGGGAGTTCGCCTGGACCCTGATGTCCAGCCTTGGCCCCACTCCATATTTCTTCCCCATCTTTTCCTTGTGCCTTTCCCGGGCCCACAGGTGGGTGGGCTGCGACCCGGGAAGCCTACTCTGTGAGTCGGTTATGTGGCGTGAGATAGTGCAAACTGGGTGTTGACTTCCTGCTCTCTCTCGGAATGTCCCCAAGCAACAACAGCCATCTTGATCTAGAATGGTTCTGTGGTCACTCCCTGGAAAAGAAAGTGACAGGTCGGCCAGAAAGACTGGAGAAATAAGCTGAAGTCCTAGAGGAAGACCACTTCGCCAGATGTTGGAGATGTACTGTCAGAGACTGAAGCACCCTCATCTTAGATACAAACGGACCATCCTTCTTCCCAAGCCACACCTGTCAGCCCTGTACTAACTCCAGCCTTACCTAGTACTTCAAGTACTTTTAAAACACTACTAAAGCTGTAATAAACCATCAGGAACACAATCCCGAGCCTAAGCTAGTTAATAGGGATTTTAAAGTGGCTTCCCATATAATGGCATCACCTTCATGGAGATTTATTTTGGACCAAGTCTCCAGCTTTTAATGTCAAAGGAGCAGGAGTGGAAAAGCCTGGTGGGTCACTGAGCCGGAGTGTGGTGTGGTGTGGCGGTGGGGAATTAGAGGCTGTGAAGGCCACACGGTGTCAATTGTACAAAAGCCTTGCATGGTGAAAGAGTAGACTCAATTCTGTGTCTGATGCCTTTATGTTTCTTTTTCACAG
Seq C2 exon
TGTGGAGGGGCTCCTGGGGGGCCTGTGTTCCCTGGACACACTCAGGACCCGCTCTATGGTTACTTTGCTGCTGTGGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049780:ENSRNOT00000073790:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]