MmuINT0152365 @ mm9
Intron Retention
Gene
ENSMUSG00000003161 | Sri
Description
sorcin [Source:MGI Symbol;Acc:MGI:98419]
Coordinates
chr5:8056542-8057621:+
Coord C1 exon
chr5:8056542-8056639
Coord A exon
chr5:8056640-8057537
Coord C2 exon
chr5:8057538-8057621
Length
898 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTTTCTTTTCTTTTTCACAGTAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGACGGGCGGAGCAGCAGACAGGCAGGGCGGAGGCGCAGTCTGCACCATGGCGTATCCCGGGCACCCTGGCGCGGGCGGAGGGTACTACCCAGGCGGG
Seq A exon
GTAAGTGCAGCGGACGAGGGCACAGCAGCCTCTGGTCTCCCGAGACTGGAAGGCGCCACGGACGAGCGGGAGGAGGCGTCGCGGGCGGTCCCAGATGCTCCCTGCGAGCTCGCCTGGACCCTGATGTCCAGCCTTGGCTCCATTTTTCTTCCCCATCTCTTCCAAGGGCCTTTCCAGGGCCCACCGGTGGGTGGGCTGCGACCCAGGAAGCCCATTCTGTAACTCGGATATGTGGCGTGAGATAGTGCAAGTTGGTGTTGACTTCCTGCTCTCTCGGAATGTCCCCAAAGCAACAACAGCCATCTTGATCTAGAATGGTTCTGTGGTCACTCCCTTGAAAAGAAAGTGACAGGGAGACCAGAAAGTCTGGAGAAATGAGCTGAAGTCCTAGAGGAAGACCACTTAGGCAGATGTGGGAGGTGTACTGTCAGAGACAGAGGGACCCTCATTTTAGATATAACCGGGCCGGCCATCCCTGTTCTTCCCAAGCCACACCTGTCAGCCCTGTACTAACTCCAGCCTTACTTAGTACTTCAAGTACTTCAAAAACACCGCAAAGGCTGTAAAAACCAACAGGAAAACAGTCCTAAGCCTAGCCACCAGGTTGCTTCCGGTGCACTGACCTCTGTAAGCTGGTTAATAGGGATTTTTAAAGTGGGTCTGCGTTTAGTGGCCATCACTCTCATGAAACTTGTTTTGGACCAAGTCTCCAGCTTTTAGATGTCAGGAGCAGGAGTGGACAAGCCTGGTGGGTCACTGAGCTGAGTCAAGGTGGTGGGGAAGATAGAGACTGTGAAGGTCGCACAGGCGTCAATTGTACAAAAGCCTTGGATGGTTAAGATAAATTCAATTCTCTCTGATGCCTTTACCTTTTTTTTTTTTCTTTTCTTTTTCACAG
Seq C2 exon
TATGGTGGGGCTCCCGGAGGGCCTGCGTTCCCTGGACAAACTCAGGATCCGCTATATGGTTACTTTGCTGCTGTGGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003161-Sri:NM_001080974:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: