BtaINT0141646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44443244-44446398:+
Coord C1 exon
chr15:44443244-44443313
Coord A exon
chr15:44443314-44446320
Coord C2 exon
chr15:44446321-44446398
Length
3007 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTCTCCTTGTCCCCGCCCAGCCA
3' ss Score
6.1
Exon sequences
Seq C1 exon
CGAGACGTTCTCCTTCATGTTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTG
Seq A exon
GTAAGTAGGCCATTCGGTCCTCAGGGACTAGGACCGAATGGTCCTAGTCCAGAGTGCTAGGGTGGGCTAGGTGCTTTAGTAGAGGAGGTAGGGTTTTCAATGTAGAAGGCTGGGCCACAGAGTTTGTATGTGTGTGCTCTTCTTTAACTTGAGCTTGTAGAAACTCTTGTGTTCGGCTGCCTTGTATGTTCCCTGAGGCCACTGTCACACACACACACACACACACACACACACACACACACACAGCGCTCCTGGGATGGCAGGACTTAAAGTGGCCACTCTGATTGGGCCCCAGGATCTGAGATAATCTATAATAAGGGAAGAGATTAGATCACTTTCTACTGGGATGTCATGTTTTTAGCTCTTCTATACTTTTTCTTTTCGTTCATTTTCTTTGGGCTTTTGAGCTCAGATCGTTGATCCTGGGTTGCAGGATCACATCAGTGTGTGTGTGTGCATCAGACTGGGATGGAGGACAATATTCCTCACCCCGACCCCTGGCCAGCCTGATGTGTGTCCTGCACTTGATCTGGTAGGACTGGAGGCTGAACAGGGACAGAGCGGTAACTTTCTGTGGGATTCTGGGAGAGATGCCTTGAGCTCAAGGGGAAAGGAAGGGTTTTAAAAACATAAGACATGTTGTAGAGAAGCACTACCCCATCCCTCTTCCCATTAGTCCTGGGAAATAGATTGGGGTAAAGAAAGTCCTGTCACACGCTCCCCTGGGGCTCACTGGGGATGTTGTTGGCTTGGGCTGTTGACAGTGTTTCAAGGTTCCTGGGCCTTAGTGGGAGAAGGGGCAGATGATGGGGATCTTAGGCAAAGGTGGTGTATAGCAGGGACCCCAAATGAAGGATTCGGGCTCATTCATTCGTTCATTCAAAAACATGTACCACACACCTACTGAGGGTTAGGCAACGTGCTGAAGGTGCATAAAAATGAGTTAGACCTGGATCCTATATTCAAGGAACTTCAGGTGCTGTTGGACTTCCCTGGTGGCTCAGACAGTAAAGAATCTGCCTGCAATGCAGGAAGACTGGGTTTGATCCCTGAGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTTCAGTATCCTGCCTGGAGAATTCCATGGACAGAGAAGCCTGGTGGGCTATAGTCCATGGGGTTGCAAATAGTCGGACATGACTGAGCCACTGAGAGTGCTAGGGTGGGCTAGGTGCTTTAGTAGAGGAGGTGGGATTTTCAATGTAGAAGGCTGGACAAGGGGAATGAACTATTACTTGGGATCCATTTTATGTTCCAGGCATGTCATTTTCTTTATTCCTCATAGTAGTCCATGAGGCATTGTTATATCTGTTCTGTAGATTAGGAAACTGAGACTCAGATGTGGAATGACTTGCCCAGGGTCATACAGCCAGTGAGCGCTAGAGCCAGGTTGACTCCAAGCTCTAAAACCCCAAGTCTGGAACTCCCAGATGACACCACAGGGTAGTCCAGGGAGAGGAATACTTGGCTATAGAATGCCTGTGAGTCGGGCCAAGGGAATGTGGAGCAGTAGAGACCAGGCGGGGAGCCAGGCAGGTTCACCTGGAACTGGAGGGGCCTGTTGCGAAGGCTGCTTTAGCAGGGGCAGAGATGGAGTAGAGCTGCTCCTTTGCAGTGGGCCTGCCGCCCCCAGGGAAGAGCGTGTTTGTCCTGGCGTGCTCAGAGAGGGCCTGGGCTGGGCCCCTGCCAAGGGGGCTGGCACTCGCTCGGCATTCCTACAGATTGGACACAACGATTCTAACCCAAATCCCACATACTTGATTTAATCACTTGGGGTTTTAGGGGAGGCGGGGGAGAGGGAAAAAGAGAGGAGTGAGTTTCAGGCCTAATATGGACAAAAACAGATTCTGCCTTCTCTTTAGATCTGTGACGTGTGGCCAGCAGGTTTGGAGACTGAAATAGCCCCATCTGCATTTGCTTAGCGGCCTGCATGAGGGGCCAGCACCTGCTGCTCTGCTCCCTCCCCACCCGGCCTGGCCAGGCCCTCCAGGCCTCCAAGCCAGAAACAGCCACAGAGCCCTGCCAGCCACTGGCTGGAGAAGCCGGCTCCTGTGGACTCCCTCCAGCCTGCACTGGGGGCTCCAGGCCTGGGGAGCTCTAGGCCCACCTCTCCTTGAGCTACCTACCTTTCAGATCCCCCTACGACTCTGTTCTCCTCTACTCTGTACAGGCCTCTCTCCCGTATCTTCATGTTTCTTTTCTCTCCTTTCTGTCAGAAGGCAACTTACTTCAGAGGTACCACAGCAAAGAGGTTACACACACACAGGCAGAAACAGACTCCTGGTTCCATGACTTCTAAATATCTGACCTTGGGTGATGGCTTACTAATTTTGAACCCAGTTTCCTCATCCATAAAATGGGAATAATAATGCCTAGCTAACAAGTTTTTGGAAAGTTCCAAGCCCAGGACTCAGAAACGGTAAACATTCAATAAATAGTAGTTTACTTACCTTATATAGTGTCAGTTTGCTTTTCTAGAATGGGGACGATCCAGAAAGGGAGAGAAGTGCAACTGAGAAAAGGAATGTGTTGCAGAATGTCTCTGGTGGGGGCAGAAGACCACCCGGCTCATTCCTAAGAATGTACACAAGCCCCTGTCCTTGCCAGCAGGCTCCCGGGGACTTGGGGATGTAAATCCACAGATCACCCTACAGCCTCTGCCACACCGCTTCATCTTTGCCAGCCCCCACCAGGGTCCTCTGGGAGGAAGGGCAGAGCCTGTGTAGCACTTGGCAGGAGCCTGGCACCTTGGGCTGGAAGGCCAGAAGAGGCTGAAGCTGACCCCCAAAGAGTGGCCGCTTTTCCTTTGAGGGCCTGGTTGAGTAGGTGTTCAGAAGAGGCCTGGAATCTTCTTTCACTAGAAGAGAGGTTTTCACTAGAAGAGAGGTGCTTAGTCCTCAGATCCTAAGAAAAAGGAGCCAGGTGTAGTAACCACATGTTCTCTGTGTCTGTCTCTCTCCTTGTCCCCGCCCAG
Seq C2 exon
CCAAGCGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCCTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development