HsaINT0159813 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8729324-8732461:-
Coord C1 exon
chr11:8732392-8732461
Coord A exon
chr11:8729402-8732391
Coord C2 exon
chr11:8729324-8729401
Length
2990 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTCCTTGTCCTGGCCCAGCCA
3' ss Score
4.37
Exon sequences
Seq C1 exon
TGAGACCTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTG
Seq A exon
GTGAGTGAGGCCATTCGGTCCTCAGGCCAGCAGGCAGGGGATAGGCCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCTTCTGCAATTTTAGCTTGTATGAAATCCTATGTTATGCTTCCTGAGGCCACCCCGAACCCCCTGCCAACACACACACTTTCACAGGTGAGGCTACCCTGGGAGAGCAGGGCTCAGAGTGGTGCTTCTGAGGGGGCCTTAGGATCGGAGGTTATCTGGAGTAAGGGGAGGGAGTGGGTTTTCATGTCTTTTTAGTTTTTCTCTACTTTTTCGTCATTTCCCTTGGGATCATGGGCTCTGATTGCTGGTCTCTGGTTGCAGGATCGAATCGCCCCCAGCAGTATGTGTATATGCATCAGATTAGGTGAGGGACAACCTTCCTCACCCCCATACCTGGCCAGCCTGTAGTGGGGAGGAGGCCTTTCTGTGGTGTGGTGGGGCTGGAGATTGGGCAGGGACAGAGACATACCTTCTCTGGGAATCTGAGAGAGATACCTTGAATCTAGGGGAAAGGGATTAGGTTTTGAAAATGTTAGCCATTTTGTAAAGAGAAGTCCCTCACCATTTCCCTTCCCATTAGTCCTGGGAAATAGATTGGGTAGAGGCTCAGAGCCTGGCCCCTGCTGCACTCCCAGCTTGGAGCTACTGGGTTGTTGACAATGTTTTGGGGTTTCCAGGCCTTAGCAAGAGAAAGCCTCCCCAGATACCAGTCTAGGGGTAGATGAAGGGGGCAGGAGCCCTGAAGGAAGGATTTGGGGCCGGCCATTCATTCATTCAGAAACACTTATCATCCCTTATCAGAAGCCCTGACCTATTGAGAGTCAGGCACGTGCTATTGAGAGTCAGGCACGTGCTCATATAAAGATGAGTTTAACATGGATCTCCCTCTCGAGGAACTTTAGATGGCCTGTTACAGGAGATTGGACTTTCAACACAGGAGGGAAGGGCCAAGGGAATAAGAGGGAATAAATGTTGTTTAGAACCTGTCACATTCCAAGCTAGATGCTTCAAGTATGTCTTTTAAAAGAAAATGATCACAATAGCCCATGGGTTATTATTATCCCTGATCCATAGATTGGAAAGTCAAAACTCAGAGGTAGAATGACTTGCCCAAGGTCATACAGAACCAGAAGGGAAGTCGTTTGTCACCAATTTGTACTCTTGGATCACCCCCAGAGGATGGACTGGGGAGAGGGGGCGTGGGGAGGTAGAATGCCCATGGAGGGGCAAAGGGCGTATGCACAGGAGTGATGCCAGGTGGTGAGCCAGGCAGAGGCCAGCATGCCTCTGGCCGCCTGGGCCTCCCAGGCTTGGAAGGAGTGTTGCGAAGGCTGCCTTTGCTGGAACATAGATGGAGCAGAGCTGCTCCTTTGTAGTGGGGCTGCTGCCCCCAGGGAAGAGCGTGTTTGTCCTGGCGTGCTCAGAGAGGGCCTGGGCTGGGTCTCTGCCAAGGGGGCTGGCACTAGCTCGGCATTCCTGCAGATTGGACACAATGATTCTGATCCAAATCCCACATACTTGATTTAATCACTTGGGGCTTTAGGGGAGGCGGGGGAGAGGGAAAGAGACAGGAGTGAGTTTCAGGCCTAATATGGACAAAAACAGATTCTGCCTTCTCTTTAGATCTGTGACGTGTGGCCAGCAGGTTTGGAGACTGAAATAGCCCCATCTGCATTTGCTTAGCAGCCTGCACGAGGGGCCAGCACCTGCTGCTCTGCTCCCTCCCCACTCGGACTTGCCAGGCCCTCCAGGCCTCTGAGTCCTGCTGGAGAAGGCACTGCAGCCTGCATGGGGGCTCCGGGCCTGGGAGCTCTCAGTGCATGTCTCCCCTTTAGCTACCCACCTTTTTTTTTTTTTTTTGAGACAGAGTTTCATTCTTGTTGCCCAGGCTGGAAGTACAATGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCTAAGTAGCTGGGATTACAGGCGCATGCCACTATGACCGGCTAATTTTGTATTTTTAGTGGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCACCTCCCTTGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACCGCGCCTGGCCATGCCTACCTTTTAAGTCCCATTCTTCTTTTGCTCCTTTACTCCATAGCAAACCTCTACCCAGTGTCTTTGTTTTCTTTCCTTCCTGTCAGAAAGCAGCAGGCTTTAGGGGTAAGACAGCCAAACAGGGCCAAAGCAAACTCCTGGCTCCACAGCTTCTAGATAGGTGGCCTTAGGCAATGGCTTTATCTTTTTGAACTCAGTTGCCTCATCTATAAAGGGGATAATAATCCCTCTCTCACAAATCTCTTGTAAAGTCCCAAGCCCAGGAGTCAGGTATAGCAAATGTTCCATAAACAGTAGCTCCCATCTCTTGTTTTCAGTTTGCTCTCTTAGAATGGAGGTGGATCAAGAAAGGGAGAAAAGAAGCAAAAAAAGGAATGGTATGCCGAATGTGCCCTATGGGGCTAAAAAGCTACAATGGCTTGTCCTAAGGATGTACCCTAGTCCTTCCCATCTGCTGGGGTCCCAGCCTCAGGGCTATGAATCCACAGACACCCTGTAGCCTCTGCCAAACTGCTTTGCCCTTTGCCAGCCCCCGTCAGCGTCCTCCTGGGAGGAAGGGTGGAGCCTGTGTGGAGCCTGGCAGGAGCCTGGTACCTGGTGCTGGGAGACCCTGCAGAGCTGAGGCCTGTCCTGAGAGTGGTGGCTGTTCCTTCAGGGCTCTGGTTGCAGAGAGGTTTAGAGGAGGCTTAAAGTCTTCCTCCACTAGAAGGGCAGTCCTTACTCCTCCGTTCCCAAGGAAAAGGAGCCAGAAATGGTAATCATGCATTCTCTGTGTCTGTCTCTCTCCTCCTCCTCCTTGTCCTGGCCCAG
Seq C2 exon
CCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)