GgaINT0058379 @ galGal3
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10667729-10675489:+
Coord C1 exon
chr5:10667729-10667798
Coord A exon
chr5:10667799-10675411
Coord C2 exon
chr5:10675412-10675489
Length
7613 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTCTTTTTGCTGTTATCAGCCA
3' ss Score
5.8
Exon sequences
Seq C1 exon
TGAGACTTTCTCTTTCATGCTGACTGGGGAAGATGGGAGCCGGAGGTTTGGCTATTGCAGGAGGCTGTTG
Seq A exon
GTAAGTACCTCACCTTTATTTCAAACAGTGGAATTCTGTTAAACAGTATCTCTAAACTGTGGTCTGAACTTTGAGGGTGTCTCCTGCTGTTTTACAACAAAACTGGGTCGCTCGCTCCGAGATTTGGAAGTGCAAGGACTTGCATTAAAATAAGACATTCAAATGTCTGTCTGAATCAAATGGATCCCAAGTCCATTAGGCAGTTCATAGGAATGTGGAAAATTTCTTCTGTGAGCATTTACCTTTTAAGTTCTTTATGTTATGTGCTTTCCAACAGCAGCAGAAATACCACAACACTGCAGGCAAAGGCAAACATGGTATTTCTAAACATTTGTGAATAAAGTTTATTTCTTGTGCAACTGCTTACATCTCCAAAGCTCTCTGCCAGTGTTGCCTAAATAACTGCAGCGTATCTATAGTGCAGGCAAATATGCCACCCTGCCCAGTAGGGTGACAGTGGAGAGCAGCCCACAGTCAGCATTTTCTCAGGGCCATGCAATAACGTGATGCCTGTGACAGGAAGTCTAGGCTCTGTGCATCTATGATGGGATGGCAGCAATGCATACAGCCATTGGCCATCCCTGTGCTAGCCAGTGCTCATCACACTTGGATAGGGTTGCAAGTGATAAGACAGCTCGTGTACTATCCATGTGACAGTGGGCTACATTTCATTAGAGAGCTTATATGGATAATAAACACTATAGGAGTGTTTTACATACTTGTGCAAAATGAATGGGCACCCTCCCTTTTCCCCTTTCTTCCCTCTCTGTCATAACTTCCCATCTTTCCAAGCAGGGAGCACCTCCCTTCCACAGCTTTCAAAGGCTTCCAGTAGACAGAGCAACTTGCTGTGTTAGAACAGCACGCTCCATTCTGTGTGCTGCTGGTACACGACTCTGTCCTTACTCAAGCCTGTGTCAGTGCTCCTTGTCATGCAGATAGCAGATGCTCTGTCTGGGAGGTATTGCTGCACGTGGGCGCTCTATTTGTAAGAGATTTCACTTAAACTAACAAAGCAGAAAGCTTGTTTATCAGTTCTGTGGGCGGTATTTGCTATAGGTAGCATCACGGAGGCTTGCTTACTCTGTGTGTCCAAGTGTGGAAGACTGAGCCAAAACAACAGGGTTTAGCTGTGGAAAGGAGATGTCAGTGAAGGCCTGTGTTACAGTAAATCTGGTTAGGAGGCAATTCAGAGATGGTGAAGTAGAGCAGCTAGAACGTATCCTTGCTGGTGTAAATAAGCACAAGGAGATGTAGTGCAGCAGTACAATTTTTAGTGTGTGTCTGTTGTTATTTAAAAGGATAATAAGGTATATTCAGAAAATGTGGACTACAATCAAATTTGGAAATGTATTCCCTCTACCATATAGGGGTGGTTTAAGGCTTTTATAGTTCTGAAAATACCAGCAAGTTTGGAATCATGCACAGAGCTCACATTTGTGACAGGCAGAACAGTTGATCCTGGATCCAAATGAGACTGAAATAAAAGCCACGATGAAAAGATGTATCGGACTCAGAGCAGGTGAAACTGTTTATATGCCAGAGGCTTGGGCTTTAAAACAGGTCTTTGTATTTAAGTGTGTCACTTCCTGAGCTATTTCTGACAAGGTCCAGAGTATCTCCTCTGAGGAGTCCCATTCCCAGCCTGTCAAATACAGTGACCCTAACTTGGGAACTACAAAAAGATTTCAGCAAACACGGTGTGTGAGAAAGATGGGGTCATATTGCTCAGGATAGAACTGTAACAAAACCCTGAGTTCATCATAAGCCAGCTGCTGCAGGGAGAATTCCTTAGAAAATATTCTCCAGCCTGAGGGGTGCTCATAACATTCAGCTGGACTTTATCACATCTTCAGGAGAACTTGGCAGTTGTTGGCAGTAGGCTCCATAGAACCACACAATGGTTTGGGTTGGAAGGGACCTTTAAGATCATCTAGCTCCAACCCTGTGCTATAGGCAGGGACACCTCCCACTAGACCAGGCTGCTCAGAGCCCCATCCAGCCTGGCCTTGAATGCTTCCAGGGAGGATGGTCAGAAGCTTCCATGGTCAGATGGACCAACCCATCCAACCGTGCGAGGTAGCATCCAGCTTATTGCTTGTGCCTTTTTGCAGAGTTAGGTGTTCCGGTGCCTCTGCTTAGAAAATAACCACTTTTGAGCTACTGAACTGTCTGCCAGCCTAGTTCTTCTTTGGTATGTTGAGATATGAGCGAACTGTCCCACTTTTCCTTTTCTGCCCTTAGATTTTGCATTCTTCCGGACCCTTTTTCTGCCTGTGTGTGTATCCAAAGCCCTGCCAAAAGTACCTCAAGGGATACAGTGACAATTATGTTCTGTTTGTATAGCAAATCCTGTACACTATCCCTTTTAAATGTATTTATATTATTTTGTTTCATTTTTTGAAACAGGATTAGAATGGAATGTAACCTATTGTACTACTGCAAACAATCTGCATTTTCATAGAGAGCATGAAGTTTTTCCAGATACATTTTGCTACCTCCAAGGCAGTGCTGTAGCTGCTTTCCTGGTCACTTGATACCAGAAGTATGCAGCTTCATATAAAGGCAAATGGGCCAATATACTTGAGATATTGCATATCACTCCTATTCCGCTTTCCTGCAAATGAGGCATTCTTCCATATTAAACCAGGTTAATTTTACTTGCATTTCCATGCTTCTTTCCATCAATTTGCCAGGCTCATTGTTCTGTGGCTGTGTTTGGGCGGCGGCTCTGTGAGTTTCACCTCACAGCTCACTCCCTTCCTTGGTGGGCATTGCAGTACCTCAGTGCTATGGGGCTGGGGAGAAAGGGAGAGCAAGAGCACCTTGTGGAGGAGGAACAGAAGGGAAGGTGCTGTAATGGGAACCTGAATGCATCTTGGGCTTTACTGCCGTGGGAGTTGCTGTGGATGCTGAGAAGTGTTAGTTCTATTCAGACAGTACTGGAATATAAGTTATTGCATCCTTAAAACAATGTCCTGCTATCAATTGCCATAGAAGGCAGCTGGTTCACGGGAATAGTGAGAGGCACAGATATCTAGCACATTGGGCAGATGTCTGAGAACAGAACAGAAAGTTTGTTATCGGGATTTTCTGGCTGGTAACTTTGTGCTTGCAGAAATATAATAACTCACAGTGTGTCTTTCACCCTACCTTACCTCCCTCTTCTCTCTCACATAAAAGTGCAGCCTGGGGCACTTTTCTAGGCTATGACAAGCGAGTCCCCGGAGTCAGGGGAGGAGCAGATGCCTGAGCACGAAGTGTGTACATTAAGACATGAAAAGCAGTCTTTAGGTGGAACATCCTGCATTCGCTGGGGCAGGAGAGGGGCATTTGTTACACTGTGGAAGCAACTCTTTTGGAGAGCACATCTATGGGGCTGAGAAGAGCTCATTGAAAAAGCATTTCTTCCTGTTGCCATACTCCCTCCATCCTGCCTTCCCTCCAGCATGTTGGACAGCCCTGTGTACAATGAGTGCTCTGGCGTTAAACTTTGTGTTTCACATATAATGAGAAGACTTTAGCACTAGTTTCTGGATTTAAAACACCGACAGCTTTTTCATGGTCTGTGTTTGGATTGGCCCTAGCTGGAAACCAAAGCTGCTGCAGAAGCTGGCTTGTGACTCTGATGGAATAACTTCAGGCTCCCAACACTTGAATTTGTTTTTGAGGAACATCTCTGGTTCTGGATATGCTGGCTGCTATTAGCTGGACACCACCAGCCTGCTTCACGGGATCTCCCCTTCTTCATCTTGATGTTTCCCTGTTTAAGGTTTTGGGATCGAGTCTGCATCTTTCTTTCTTCCAAGGCAGTCCAAGTGCCAAGCAGAATTAAAAGTGTCCTTTTCACAATCCTGAAGAAAGGAATAGAGATTGTGCACTGTGTGCATTTGCTTTGCCCTTTCGACTTAAACATTTTTATATGCTATCTCTGTTATATGATCACTGCCTTAATTACTGTGAATTGCAATTGAAGCGTCCACAATTCTGATCTCAAAGACAGCCCACGATGCTAGAGGCTTACCCAGAGCTAATGCATGTGCTTTGCAAAGGCAAAGAGGCTGTTGTGTGTTTGTCATGTTCCTTTTTCTCCTGGCCTGGGCTGGGGCAGCCCTTACTTTTTCCTCAGGTTTTCCTAGTCATGCTCTCTGGAGAATTATCCAGAAGGTCTCAGTAAAGATGTCCTGGCTCGCCCTGGGGAGGAAGGGGTATAGTCCCTCTGGAGTCTTCAGGTTGATGTTAGTCTGTTTGTTTGCTTCTCTTCCGCTGTGTTGAGATGGAATGTAGGACTGTGTTGCGTGTTTCTCTTCTGTGCTGTTTGGTACGTCTGTCTTAGCTGCATTCCCCCTCCACACAGGGTGTCTTCAGGTAGATGGGAAGGCTGGGAGAAGTGCAGGAAGAGAAACGTTGCCATTGGTCCCCACTGCTTTGATTCCTCTGATGCCAACACACTGGTACCAGTGTTCCCCTGTTACTTCTGGGGCCAGGAAAGCTGGACTTTTCTTGCCGCTGTCTTTAAAGCCCCCAAACCACTGAGTTAGGCGGCTGGTGGGTGTGCACAGTGCCTTGATTTGAAACCAGGAGTGTGTGGTGTGTGAGAGCATCTCAGCAACACCAGACTGGGAGGAGATCTCTGAAGGCATCTTCTGGATTTCAAGCACCTGGGTTGGGAGGTGAGCTTCAAAAGAGAAAAGTGGTAGGCTTATTTTCAGAAGCAAAAGCCATCTGTTCCACCTGCTAAAGGCAGATGATGAAGCAGGTTTTGGAGGAGTCTTTACTCAGCAAACATCAGATTAAACTCATTGTAACAAGGCTGTCCTGAACCACTTATGGATGAGCCCTGAAGCAAATCTCAGCTCTTCCATCTCATAGCCAAGTTCTTGTCAGTTTATGTGCATGCTCTTGGAATTTGTCTCCTGTTATCAACAAAACTCATCAGTGTTTTAATCTGTAGTGGACTAAGGCCGAAAATATCCCGGACTTTCTGAAAACAACTCAAAAACATATCAAAACCAAAACATCATTCTCTCCACCCTCCGTCCTTCAGGAGGAAGGCAATATGTCAAGGCAGAGTCAGCTTGTGCTCCTTTAGCACACATAGCTTCCTTGAACTGAGCATATCGACTACGTGGAAGAGAGAATGAGGCAGGATGGGACTCCAAGGCTGCAGCTATCTTGTAGAGCACAGCCTTCAAACTGGAAATGCTCTCTTCTGGGAGGGGGAGAGGTTAAACCAGCACCATTGGCTGGGTGCAGCCCCTAACTCTCTACTATTTAAGGGAGATAAGTTCAAGCAGAGAAGGGAGACGTTGGGGATGGGAAGGTTGAGTTAACCCATACGTTCTTCTGGGAAAAAGACAAACCTATAACACAACGAGCAGGTGGTTTAGATCTGTCTTTGAAGTGTAAACTAACGGCTGAGAGGGGAGTTATGCGAAAGAGTCGCCAGTGCTAGAAATTTGAGAAATAATGCCCTTCAGAATGGCTCTGCCTGAGGATTTTACGTGCTGCCTCTTACGGATGATTGGCATGCAGTGGGGAGCCCGTGCTGTCTGCAAGGAAACATCTTTGAAATAACAGAGAAGGCTGTCCTATATGAGGAGTGCAAGGAGCTCCTAGACATGTAGCCTTTACAATGTTTGAAAGCAATGATATTTCATAAAGCAGAATCTTTGAGTAAGTGCTGAGCTGTTATTGTTTCTGATCTTATAGATGACCCAGGAATGTGATGTTTTTACTGGCAGTCACTGAGACAGCTCTTGGCTGGGAGCTATCCAAGACTCCTGGCATGGCTTCGGCATTCCTGTAGATTTGACACAATGATTTTAACCAAAATCCCACATGCTTGATATAATCACTCAGTGCCTTTAGAAAGGGTTTTATACCTAATATGGACAAAAAAGGATTCTGCTTTTTCTGAGACGTGACGTGTAGTGAGCAGGTTTGGATCCAGAAATAGAAGCATCTGCATTCACTTAGTCCGGGTATTTCTTGTGGTCTCTGTTGTAATAGGCCAGGCACCTGCTGACTGTCCAAGCCCAGCTTGTGATATTCCAATTTGAAAAGCACAGCTACCCCTCAGTTTCTCTTGATGGATGTGACACGTAAATGCCAAACACACTGGGGGGCTGTTAATTACTGTATCTGCAGAGTCAAATGATGAAACAAGGATTAAAAAAATATGCCAGCCTTCTACGTGGATGCACAGGAGATGATCAGCCACTTGGGAGAGCAGATGGAAACAGTGATTCTGAGCTCCTTGAGCACAGCATTTCTGGGGTTGATTCTGTCACTCCTGCATAGCAATAATGTACAGCTGTGCGAGGAGGCTAAGTGGTGCCAGGTGATTCTTTTACAGACACTTTTTATTCAGTTTTTCACAAGTACAGCTGTCTCCACTAGATAGAGGGAATTAGGAGGCTTGTCTGTCATCATAGACCCCGCTTTCAGCTTTTTGCTACTGGGGAGCTGCTCTTCAGCTGCTCTGTGCCATATTGGACGTAGCTCCTGCCAAAAGCAGCACCAGGACTTCCTTGCATTGTATCTTGGGAATGTGTGTCGCGGCACCTGAAGTCAGCAAACTGCCTTGTTCAAAAGACTCCCCTTAGGAAATGTGTCCCTGTGCAACTGGTGAAAATCAGTTGCAACTATGAGATACTGCAGTGCTGTATCACAGCTTGTTAAGAACACAGTGGTGATCTTCGGTGCGTGGATGTGTCTATCTGCGCTCGCTGTATGCACGCAGGACACAGGCAGACTGCCTCTCTGCTCTGAGAACCTTGCCAATGAGGCTGTTTTCCTAAAATGCTGGGTGTATTGGCCTAGTTCTAACTCTTTTTTAGTGCATAAGCAAAATCCAGCAAGTGGTTGCAACCTTCTTTCACACATAGTGCCACCAGGCCTTTCCCTGTACCAGCACAGGCAGCGTTGCTAATTACAGTATGCTGAGAGATTATGCTTCAGTCATGCCAGTTTAAACCATTTGCTTCTCTAGGAAATATCTTCACTAGGATGGTTTCGGAGAACCATTTTGACAGGTTTTTGGGGGAGAAAGAGGCACCACAGACTCATTCTCGACGCAGTTTAAGTTATTGAAGAGTTTCATGTTTATCGTGCATGGATCTGAGAAAGTTAATGATTCAGCTCATGCAGCTTGCCTTTGTTTAGGTCTGTGAGCTTGCTTTTGGTAAGTTAAGCTGCCTTTGAACATCATGAGTGAATTGGGCTCTACAGCCATAGTTACTTCCCTAGCACTGTAATTCTCATCTCCCAGTGTATGGTCCTGTGGTGGCCTCACCCCAGCAGGAGCAGAGGACGGTGGCGGTATAAGGCATGAGTTACAGCCATAGTTAAATGAGCTTTTATGGCTTCAAGTCAGAGCAATGTTGGAATACAGCTCCAATGTGCCGGGTATTTCCAAAGTGGGTAAGCGCTATTTGTGCTTTTTAGCCTGCTGTCTTATGATGCTTTTCCAAGAGTAAGCTATTTTGATGGAGAAACAGATAGTGACATACATTACACGATGGCCAACTATGGGATCAGAGAGAGAAGTATGTTTCTGCATGGCTCCAAATCAGTACGTAATTTCAATCTCTTCTTTTTGCTGTTATCAG
Seq C2 exon
CCAAGTGGAAAAGGGCCGCGCCTACCTGAAGTCTATTGTGTCATCAGCCGCCTGGGGTGCTTTGACTTATTCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(32.9=100)
A:
NA
C2:
PF0214116=DENN=PU(10.3=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]