BtaINT0141661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44440663-44441872:+
Coord C1 exon
chr15:44440663-44440707
Coord A exon
chr15:44440708-44441687
Coord C2 exon
chr15:44441688-44441872
Length
980 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GATGTGTGGCCCGCCCCCAGCCC
3' ss Score
5.94
Exon sequences
Seq C1 exon
ATGAAAATAGCGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAG
Seq A exon
GTGAGACGTGGCTCCTAGAGAGCAGGGACCACTTCCCAGCCCTGGTGGAAGGGTATCTATCAGCCTTTGCTGTCCCAGCGTCCCAAAGTGGCCCAGTTGGGAAGGGTATCAGCAGGCAGGATACGAGGCCAAAAGAGCAAGGAGCTCTAGGGGAGTCCATTCCTTCTATCATGGAGCTCAGCCCTGTGAGCTTAAATTCAGACATCTCCCCTTTTCCAAATTTAAGGCTGGTGACCCTGCCCTACTTTCTTAAGCCATTCATTGTCCATCTAGGTTTGCCTGGTAAGTGTTGTGGGTCTGGAGGGTCAGAGATGTGTTCAAGGTTCCTCTTCTGGTTGTGAGAAATGTGCTGAAGTCTGAGGAACCTGGTGCTTGGGAGGCCCTAAGGCCACTCATCTTTCCCCTCCCTAAAGAGGAGAGCTGCCACCTCCCTGGAAGGTTTCTGGGACCTTCACATTCCAGGGGCCTTGGACAAATCTCTCTTCTTTCTCTACCGAGAACCCCTGTTTAGACCTTCCTAGATGAATCAAGTTTCGATATTGGGAGCTCCCTCCTTCCCTCCTTCTCTCATCCCCAGGCATGTGGGCAGGTGGACTTTGGGCCTGGGGACAGGGGGAAGGGTCCAAGGCCAAGGTTGCTAGGGCCCCAGGATGAAGGCTTCGTGGATGTTTGTATCTTCTCGCCCTGTTGGCCCAGGGTGTGTAGGTGCCATGACGCCTCCCTGGGTTTGCCTGGCTCAGGCAGTCTTATTGGCCCCAGCCCAGCCTCCAGAGGCTCCGGGAGGCCCAGACCAGTAGCTCCCTGTGTCAGATCAGACAGACAGACACCTTGCTCCTGCCAAGTCTCGCCCAGAGCTCGGGGGGTCAGGCTGTCAGGCTAGGCTCCTGCACTTAGAGGTGACGCACTGGGATGGAGCCCTGAGTGTGAGGTGGGGCGGGAGCTGACGCGGGGTCTTGTCCTGATGTGTGGCCCGCCCCCAG
Seq C2 exon
CCCACACACAGCGCCTGGTCCACATCCAGTCCATGCTGAAGCGCGCGCCCAGCTACCGGACCCTGGAGCTAGAGCTGCTGGAGTGGCAGGAGCGGGAGCTGTTCGAGTACTTCGTGGTCGTGTCCCTCAAGAAGAAGCCCTCCCGGAACACCTACCTCCCCGAGGTCTCCTACCAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.9=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCGACTCTGATGACAG
R:
CTTGGGGAACTGGTAGGAGAC
Band lengths:
214-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development