DreINT0156562 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28227286-28228764:-
Coord C1 exon
chr7:28228720-28228764
Coord A exon
chr7:28227471-28228719
Coord C2 exon
chr7:28227286-28227470
Length
1249 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTGTGTTGTTTTTTATGCAGCAC
3' ss Score
7.74
Exon sequences
Seq C1 exon
ATGACAACAGCGAGAGTGAAAGTGACTCTGACGACAGGTTCAAAG
Seq A exon
GTGAGGCATCAGCACATATGGCTGAGTGGACAGTGTGTTTGAGTTGACTTCTGCTCAAAGACTGCACAAACAACATCACATGGCCTTGTGATTTGTCACAAGTAAATGTAAAATCTGTGCAGCATCATTACTAATAATATATATACAGTTAAAGTCAGAATTATTAGCCCTCCTGAATTATTAGTCCCTTGTATGTTTTTTATCAGGTGTTTACCTCAACACATTTCTAAACATAATAGTTTATAATAGGTTAATTTCTAATAACTGATTTCTTTTATCTTGATGGGAGTGCACACTATTTAAGTAGATATTTTTCAAGAGACCAGTATTTAGCTTAAAACACTAGGTTAATAAGGTTAACTAGGCAAATTAGGGTAATTAGGCAAGTATAATGATGGTTTTTGTTTTGTTTTGTTCGACTGTATAAATCCCAAAGGGAAATTCACATGTCACAGCAGAGCTTTCCATACTAAAAATAGATAAAATAAGTTACATATATATAAAAACAATAATAAAATGACATTCATACTGCGGTTTTGACACACACCAAAGAACATCAGTCGTCTTAACAAATGAATACAACTCTGCCCCTTCTTTTACACCTGAATTGTATTTTCAGACCAATCGAACTTGTTATTCAGATATACACTCAGGGACCTATATGATGAAACAATCTCAATTGCTGACTTCTGTATAATCACTGGAACCGCTTGTTGTAGATGTCTACTAAAATCAACAATGGTCTTATTAGTATTTATTTAAGTAATTTATTTAATTAAAATTTTTTTTTACACCAGTCAGCAAAAGTTTTTAAAAGCAACCTATACTCACTCCCGTCATGATCCTTTTTGTAACCAACAATTGCAGAGTCATCATAAAATTTCTGTAGATGACAATTGTTGGAGCTGAATGTAAAGAAATATGGAGCTAAAACTGTTCCTTGAGAAACACCAGTGCTACTCATTACAACTTGCGACAAACAGTTATGCAGGAGTTATGTTCTGTAGACTATCGAAATAATATATTGCTTAAGAGGGCTAATAATTTTGACCTCAAAATGTTATTTAAAAAATTAAAAGCTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATGATCAGACATACTGTGAAAAAAAATCTTTGCTCTGTTAAACATCATTTGTGAAATATTTGAAGCTTAACTTTTTATTGAAAATAGCACTGTCTGTGTGTTGTTTTTTATGCAG
Seq C2 exon
CACACACTCAGAGGTTGCTGAAGCTGCAGTCTATCCTGCGACGCGCACCCAGTTACAGGACGCTGGAGCTGCAGTTGATTGAGTGGCAGGAAAGGGAGCTTTTTGAATACTTTGTGGTGGTCTCGCTGAAGAAAAAGCCCACCAAAAACTCTTACGCTCCAGAAGTTACCTACCAGTTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.9=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACAGCGAGAGTGAAAGT
R:
GGTAACTTCTGGAGCGTAAGAGT
Band lengths:
214-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]