RnoINT0144184 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174152977-174153743:-
Coord C1 exon
chr1:174153699-174153743
Coord A exon
chr1:174153162-174153698
Coord C2 exon
chr1:174152977-174153161
Length
537 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATGTGAGGCCTGCCCCCAGCCC
3' ss Score
2.43
Exon sequences
Seq C1 exon
ATGAGAACAGTGAAAGTGAGAGTGACTCTGATGACAGGTTCAAAG
Seq A exon
GTAAGGCAACATCCCTCCCCATCCCAAGGGAATCAGCTTGCTCTTCTGCATGTGTGGGCCCAGGGTCCCAGACTGGCCCTGGAGTACGGGGAAAAGTCAACAGGAAGGGCAGCTAGCAGACCACCAGAGCAGAAGGCTATAGAGAAATTCCTTCTGTGAGCTCAGCCCTTCAGTTTTAAGTCCAAAAGTTGGTCTCCCAGTGTCAAATTTAAAGCTGTTAACTGTCCATCCTTCCCAAGCCATAGTTCTGGAGTCTGTCTACTAGATTTGCTTTATAGATACTGTAAATCTGGAGGGCCAGGGGTGGGTTCAGATTATAATCAACTCTTTTGGTTACAAGAATTGTGCCATAAACTGAGAAGATTGTCCTCTGGCACCCTTAAGGCCACCTGTGTCTAGAGAGGAGGCTGAAAAGTCAGATAAGACTTATGTACATAGAAGTTATTGAGAAATGGTGCTCTGAGTCAGGTGATGGGGCTGATGGGAGGTCTTTATGTGGCCGATCTGGTTGTCTCCTAATGTGAGGCCTGCCCCCAG
Seq C2 exon
CCCACACACAGCGCTTGGTCCACATCCAGTCAATGCTGAAGCGCGCACCCAGCTATCGGACACTGGAGCTGGAGCTGCTCGAATGGCAGGAGCGGGAGCTCTTTGAATACTTTGTGGTTGTGTCCCTCAAGAAGAAGCCATCTCGTAACACCTACCTCCCTGAAGTCTCCTACCAGTTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.9=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAACAGTGAAAGTGAGAGTGAC
R:
CTTGGGAAACTGGTAGGAGACTT
Band lengths:
230-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]