HsaINT0159828 @ hg38
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8712551-8714042:-
Coord C1 exon
chr11:8713998-8714042
Coord A exon
chr11:8712736-8713997
Coord C2 exon
chr11:8712551-8712735
Length
1262 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GATGTGCAACCTGCCTCCAGCCC
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAG
Seq A exon
GTGAGGCACAGCTCCCATGAGTACGGAAGCTCTCCCAGCAGGGCTGCAGGGAATCAGCCTTCCCTTCCGATGCATGTGTGGTTCCAGTGTCCCTAACCGGCCTGATGTGGAGAGGTGACAGACAGGCCAGATACCAGAACAATAGAGCAGGGAGCCACAGGGAAGTCTGTCCTTATAGACATGTGAGCTCAGCCCTGCAAGGTTAAATCCAGATGTCTCCCTTTGCCAAATGTAAGGGTGGTGACCTGCCCAAACTGTCCCAAGCCATTGTCCATGGGAGTTGGGTGCTAGATTTGCCTGGTAAATGTTGTAGATCTCAGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCTAAGATGGTGAAACCCCATCTCTACTAAAATAATACAAAAATTAGCCAGGCACGGTGGCGGGCGCGTGTAATACCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCTGAGATCATGCCACTGCACTCTAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAATTGTAGATCTGGAGGGTCAGAGAGGGGTACAGAAGATTACAAGGACCTCTTCTGGCAAGAAATGTGCCGTAGACTGAGGAAACTGTTTCTCTGGAGGCCCTGCAGTCCCCCATCTCCCCTGTCCCCAGAGAGGAGCTTGAAAAGGTTCTGGAACCTTCACATTCCAGGGTCCTTGGATAAATCTTTGTGCTTTCTCTACTGGGAAACCCTGCCTAGGCCTTCCTGGATGATTATCCTCTCATCCCCAGGCAAATGGGCAAGTGGACTTTGGATGTAGGAGCATGTCCTGCTAGGGGCCCAAGGATGAAGCCTTCGTGGATGTTCGTGTATTCTAGTCCTTTTGGTACAGGGACAGAGTGGGTGCCAAGATACATCCCTGGGTTTGCCTGGCCTCGGCAGTCCTCCTGCCCCAGCTCAGTCTCCAGAGGCTCCAGGAGGACCAGGCCCGCAGCTTCCTGTGTCAGGGCAGAGTCTTTGTGCAGGGGTCAGCACCTTGTGCCTGCCGGTCCTCCTGCACTGTGAGCTGGGGATGGTATCAGACTAGGCTCACGTACTTAAAAGTGCTCCACAGCAATGGAGCCCTGAGCCAGGGGTAGAGGAGTTAACATGAGGCCTGTGAGGGTCCATTCCCTGATGTGCAACCTGCCTCCAG
Seq C2 exon
CCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444:ENST00000534127:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.9=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAACAGTGAGAGCGAGAG
R:
CTTGGGAAACTGGTAGGAGACTT
Band lengths:
230-1492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains