BtaINT0141663 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010357 | ST6GAL1
Description
Bos taurus ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 (ST6GAL1), mRNA. [Source:RefSeq mRNA;Acc:NM_177517]
Coordinates
chr1:80824272-80830455:-
Coord C1 exon
chr1:80830335-80830455
Coord A exon
chr1:80824921-80830334
Coord C2 exon
chr1:80824272-80824920
Length
5414 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTGTCTCACTTCTTTTTAGGCA
3' ss Score
9.66
Exon sequences
Seq C1 exon
GATCATCCTGAGAAGAATGAGCCTTGGCCTCCAGACCCAGTAAAACAGACATCCATGGAGAACAGTGTTCGTTCCTGAGGACCTGGAGGGCTTGCAGCCCAGGAGGATTAGCTAGAAGCAG
Seq A exon
GTAAGGAACACCTGGAGGAGTGGGATGTGGAAGCAGCATGGGGGTCCATACTCTGTTTAGGAGAGGCACAGTGGAGTGCGCTGGTAAGAAGCCATAGGGGCTCAATGTATGGCTACAGCTTTGCTGTTTTCTTTGTGTTTTTTATTTATTTATTTTTCAGTGCCTAGTGTTGATAGGTGATTTGCCTATTTCTATAAACTATAAATATAAGATTTAAATTTATTCTGTAATTCAATCTACCTTTTTAAAGCACCTATTCTGGCCAAACCCTGCATTTGATACCCAGCAGGTAGTGATATAGTGATATAGATGGGGAGCCCTCCTTTGGGATTTTCTTTCTGTTGGTTCAGTGTTGGCTTATTCTCTGTAAGTGATAATGTGAGTTGTTACTTATTCCTCTAGAAGCCAGGTGGGGGTTGTTAGCATTCATTGATAAGTCCAATCAATTCAAGAATCCTTTATTGAATACCCACTGTGTTCCAGGTGTGAGGGGGCACTGGAATTTCAGAAATGAGCCAGGAGGAGTCTCCCTCTAGCAGGGGGTCAGTATGAAAAGCAAACATTACTGGGACTTCTCTGGTGGTCCAGTGGCTAAGACTTCATGCTCCCAGTGCAGGGGGCAGGGGTTTAATTCCTGGTCTGGGAAGTAAGATCCCACGTTGTAGAGCATGGCCTAAAGACGAAAATCAAAAGCAAGCATTACTAAACACTAGAGATGAATAGCAGGGAGCAAGAACAGTAGGGAAGGGGAGATGGCCTCCACAGGAGCCCAGAAACGGAAAGGCTGTTTGGTTGCCAGGCAAATGGACAAGAGGAGAGATTCCAGCAGTGCAAAATTGTAGAGAAGTAAGAAGGCAATCAGACAAATGATTGAGAAATTAAAAACTTGGACTATTTTCCCAAAGAATTTGGGGAAAAATATTTACTATTCCTTTCCTTCAGTCTGGGCTGTTCAGATGAAACTTATTCAGTCTGTGTCTCTCTGTAGCAGCTTGAGAGATGAGATTGACTCTCTAAGTCCCTCTGACTAGAGGGTCTAGCCAGTGGTGGACTTGGAGCCTCAACAGAGGATGGTGTTCAGAGAACTGGGAGCCCTGACATGAGGTTTCAGATGAGTGCCCATGGCACTCATGACAGTTCAGTTCAGTTCAGTCACTCAGTCGTGTCTGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTAACTCAAACTCACGTCCATCAAGTCAGTGATGCCATTCAGCCATCTCATCCTCTGTCGTCCCCTTTTCCTCCTGCCTCCAGTCCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTCGCATGAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGAAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGAGCACTGACCTTAAAGGCTGAGGTGCTCTTGAAGTTGTAAGAGTGTGTATGGTTGAAGGTTTGGAGAACTCTTCTTTCCCGGGAAACCTGACCTTTGAGGGCAGGGTTTGGCAGGAAGCTGAACACAAGCCCTTCTGAGCCTCGGCCCAGTGAGATAGTGAACCAGGTTCCACATCCCTACCTCCTGTCTTATTTCACTTATACACATAAAAGTTAAGTCCAAACTCCATCATTACCAAATCACTCACGCAACTTTGAAAATTATTTATGTTTACAAAATCATAGTTTCTTTATTTCTTAATAAAATTTCCTCTGCTTATCTCACAGGGTTGTACTGGGTCTCATAAATCCAATTGCTGGGTCACCTAAATGGTAAAATAGTGCACAGTAGCAGTGTCAGCACAGATAGTGAGGGTGTTTATTTTGTGATTGTCCAGCAGTTATCTCATTAGAGACCCTGAATTCTGAGTCTTAAGTCAACACTGACTTTTCACTGTACTTTTTCACAATGCCTGTCCATTAATGCAAAAACCATGGACTTTTAGTCAGACAAATCTGGGTTGGAATTCTGGATTATAAGTATGCTCACCAAACTCAGGAGAAGAATAGAGGAAATAAGTACTGGCAAGGGTGTGGAGAAAAGGAACCCTCATACACTGTTGGTGGGGGTGTAAATTTGTGTATCCACTGTGGAAAACAGTATGGAGTTAGCTTAAAAAATTAAATATAGGACTACTGTGTAATCAAGGCAGTTCCACTCCTGGGTATTTATCCTGGAAAACAAAAAGCTAATTCAAAAGATTTATGCATGCCAATGTTCATTGCAGAATTACCTATAATTTATAATTGCCAAGATATGGAAGCATCCTAAGTATCCATCAACAGATGACTGAATAAAGAGTATGTGATATATACATGTATATACACAAACACAATGGAATATCACTCGGCCATTAAAAAGAATAAAGCCATACCATAAAACCTTGCATTTTGTGATATGGATGGACCCAAGGAATATTATGCTAAGTGAAATAAGTCAGAGAGTGAGAGACCCACAAATACTGTACATTTTCACTTACATGTGGAATCTACAAAAAAAAAAACAGAAACAGACTTAGAGTTACAGAGAACAAACTAATGGTTGCCAGAGGGAAGGGTGATAGGGGGAAGTGTGAGAGAGGTAAAGGGGGTTTGAGGTATAAACTACTAGTTATACTTAAGTGTGCTGGTGTGGCTGGCTGGCTAGAGTATCAGTTATAAATAAGTCAGAGGGATGTAATGTACCACATAGAGACTATAGTAAAAAATGTTATAATGGTACATAAACACAAGCTGGAATCAAGATTGCTGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGTGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAGCGAAGATCATGGCATCCAGTCCCACCACTTCATGGGAAATAGATGGGGAAACAGTGTCAGACATTTTTTTTTTTCTGGGCTCCAAAATCACTACAGATGGTGACTGCAGCCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCACTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAATCAGTCCATTCTGAAGGAGATCAGCCCTGAAATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAAGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGTCAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTCGCGAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAATCTATAAAAATATCAAATCACTGTTTTAGACCTGTAACTAACATTATAAGTGACCTGTACTTCAGTTATACTTGATGAAGGACCTGAAGTTTAGGTTGATGAGTCATGGCCAGCGCTCCACTCTGCCACTGTTTGCCGTTCCACATTGCCTCCATGTGGCTCTCATGCCCGTGGGCGCTGGCGGGGGTGGGCTCTAACCTTCTGTGCCTTATATTTACCTAGTTCAAAGTCCATGAATGTCATTCTCCTTTGGTGTTCCCAGGACCAGTGAATGAGACATGGCAGAGATGATTACTCCACAGAAACAGGTGCAGAGAGGTTAAGAGACTTGCCTAAGGCCACCAAGAGTGGGGACAAGAAGCCAGGTTCTGTGATACCCATTTCAGTACTCCTACCGCCTTATCTCTGATAACCTTAGGAGCAGGCTTCCTGGAAGTCGACTATAGATCTGTTTCTTTTTTTTTTTTTTTTTTGAATTTTTAAAAATTATGGTTGATTACAATGTTCTGTTAATTACTACTGTATAGATTCTTAATCAGTTAGCAAAATCCTAGGGGTAGTTGCTTTAACTCATTATGGTAAATAAACCTAGTTACTTAGGGAATAAGTTAATGTTTTCCAGAAGATTACAGACATTATTTGAATTCAAAGTTCTTCCATTTTCCGTTCAGTTTGACAATAAATTCTGGGAAAGCAAAGTAGGTCTTTACTCAGATATAAAGGAGCCTATTCAGGCTCTATTTAATTTGTGAAGTCCATTTTCTAGAACTTTCAGCATCCTGGACATGATGCAGTGAAAGGGTCACGGGTTAGGAAAGCAAGTGCGCTTGGATTTGAATCTCAATCTACTATTCACGCAGTTCTGTGATCCTAGGCATTTCTCTTAGTTTCTCAGCACCTCAGGTGGTTAATCTATAAAAATGGAGATTATGGCACCATCATGGTTGGTGATGGTTAGGGCTTTTCTGCACAGCTCTGGAGATGCCCTTCATGTTAGGTTATTATTAACATGGTGCTCACTGATATTGTTTATCATGATGCCCCCTGGTTTATGATGAAATTAAATGAAATAACCTCCTATGTGCTTAATGCATTTTTGTTTTCATTTCCTTAACTGGTCACATATCTGCTATCTTATTAGGAGATCCCATCTTCTGCTATGAGGAGAGTCAGTTTCCTGCCACATGCAGAACTCCATAAACCTGAATGTTCTATTGTGAAGCTAACCCTTGGCTTTCTTCTCGCACAGGAATCTAGCACCAGAGCCTTTAGAGAAATGCACTGTGCACCTACCACACCGTCTATGGTGAGAGGTCTCTTCCTGGCAATTTTAAAAGGAGGCCAGGCCTTTTTATGGAGTTTGGCTTCCTGTGACATAGACACGTCAGCCTGCTCTGCTGTTCTCTTTTAGTTTTTCAAGCATGTATGCCTTCCTTGAACAAATAGTGTGAGGCCCTAGGAACTGAGTGTGTAAGTTGTGGTTCTTGACCTCAGGAAGCCAGACTGAGACAACAGGAAACTAAGATTCAGGGAGTACAAAGGTGTGGTGGGCAAGTCCATAGAGTGCTCATGGTTCAGAGAGGAAGATGAGAGTGTCTGAGGATGACTTTCTACATTTCAAGCCCAAACTGAGGGTGATTTTTTTTTATTTTGGAGACTTGCTGAAAATGGGAGATAGGCATGGGCTGGAATTCAGTTCTCGTCACTCTAAAGCCATTGCTTAGCTCGTCATTACTTTTGGCTGTTCTTTACATCACTTTCTGCCTTGTCTCACTTCTTTTTAG
Seq C2 exon
GCATATTTTCCTGCTCAGAACAGCGTGGTTTCCTTGAACACGTCCTTCATTATGACTCGCACCAGCTTGAAGAAAAAAGTCTTCAGCTGCTGTGTGCTCATCTTTCTCCTGTTTGCCATCATCTGTGTGTGGAAAGAAAAGAAGAAAGGGAATTACTATGAGTTCCTTAAACTGCAAAACAAGGAATACCAGGTGTTGCAGGGCCTGGAGAAACTGGCCGTGAGCTCTAGTTCCCAACCTGTGTCCTCCAGCAGCACCCACAACCCCCAGAGGAACATCCAGGCACTCGGTGGTCCCAAGGCCAAGTTGAAGGCTACCTTCCAGGTGTGGGACAAGGACAGCTCCTCCAAAAACCTTGCCCCCAGGCTGCAAACTATCCGGAAGAATTATCTGAACATGAACAAGTACAAAGTGACGTACAAGGGGCCAGGGCCCGGGGTCAAGTTCAGCGCAGAGGCCCTGCTTTGCCACCTCCGGGACCACGTCAACATTTCAATGATAGAGGCCACAGATTTTCCCTTCAACACCTCTGACTGGGAGGGCTACCTGCCTCAGGAGGACATTAGGACCAAGGCTGGGCCGTGGGGCAGGTGTGCTGTGGTCTCTTCAGCAGGATCTCTGAAGTCCTCCCGGCTGGGCCGAGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010357:ENSBTAT00000012565:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.085
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(24.4=30.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development