HsaINT0159833 @ hg38
Intron Retention
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10860]
Coordinates
chr3:187038742-187043310:+
Coord C1 exon
chr3:187038742-187038873
Coord A exon
chr3:187038874-187042653
Coord C2 exon
chr3:187042654-187043310
Length
3780 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTGTCTCACTTTTTTTAGGCT
3' ss Score
10
Exon sequences
Seq C1 exon
ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGGGGGATTAGCCAGAAGCAG
Seq A exon
GTAAGGAACACACAGAGGCATGGGCTAGCAAAGGGGTACATTCCTGAGTAAAAGCTGGTGTGGCAGATGTCCTGGCAGGGAATCTCAGGATCTCAGTATCTGGCTCCAGCTTTGCTGTTTTCTTTTTGTATGTATTTTTTAGTCCTCTTTAACTGCTGATTCAATGTGGGTTTCATTGGGGGGTGTAGAGAAATGGCTTGTCCATTTCTATTAACTATATAAGATTTAAGTTATTCTGTATTTCAGTCAACCATTCTGAGTACCTACTACCTGCCACGAATGCAACTGGTACTGAGTATGTCATGACGGGTGGGTCGGGACAGGATTTCCTTGCTTTGAGCATTGATTTCTGCCGGTTCAGTGTTGGCCAGTTCTTTGAAGGTGATGATGCAAGTCGCTGTGTTCTTCCTCTAGAAGCCTCGTGATGATTGTAAAGATTCTCTGATACAATTGCATCAGTTCAATAATCTTTCATTGAGTATCCGCTCTGGTCCAGGCACTGTGCTGGGTACTAGGGTTTCAGAAAGGATACCAGGAGGAGTTTTCCTTGAGCAGCAAAGTCAGGCATGAAAAGCAAGCATTACAAAGCACTGGCTGGCAGCAAAGGGGAGCAGGGATAGTGCGGAAGGGGAGGTGGCCTCCACTGACCTTCAGAAGCAGAAAGGTGATGCTGTCAGAGCTGGCAGGCACATGGACAAGGAGAAAGAGTGCAGCAGTGCAGACACCTGGAGGCTTAACACAGTCTGGTGTAATTGGAAAATTCAAAGCTTAGTGTGTTTTTCCAAAACATTTGTAGAGAAAAGTTTGCTACTCTTTTCCCTCGGTTGCGCCATTTAGAGAAAGTTTCTTCAGCCTCTGCCTTCTTCAGACAATTTGAGAGATGAGAAAGGGTCTTGCAGTTATAAGTGCCTGTGACCAGAAACTCCAGCCACCTGGTGGACTTGGAGCCTCAACCAAGGGTGGTGTCAAGGGACCACATGAGCCCTTATGTGAGATTTCAGATGAGTGCCCTGAGGCCATGACAGAGCACAGGCTGTGAAGGCTGAGGCTGTCTGATGGTTGCAAGACTGTCGCTAGACCCAGCTGTTTGGAGGAACTCTTCTTTCCTGGGAAACCACACCTTGGAGAGTAGGTACTGGGCAGCTGCTGCCTGAGCCTCCACTCCTGTGACAGTGAATCAGGCCCTTCCTGCCATCTTGTTTCATTCAGACATGTGAAAGTCAGGTTCTAAGTCCACTATTTCCAAATCACTCATGCAACTTTGAAAATTATTTGTATTTCCAAACCTCACTATACTCAGCTATAAATGGAGCTCATAAAATCTGCTGTGCTTATCTCACGGGAGTATAATAGGTCTGTAAAACCTTACCAATACGGAAAGTACCTGAGTGTTACCACTCAGTGCACAGCAGGGATGGCAGGTGCAGCACTGATGGTGAAGGTGGCTTGTCTGCGACTGTCTGACAGACGAAGTTGCCTCTCTAGTGACCTTGAGTCCGACTTGATCACACTGACTTCTCACTGTCCCTTATCACAGATGCATGTCCTTGGGTGGAAAGATGATGAACTTTTAGAGTCAGACAGACCTGGGCTGGAATTCTGGTTCTAGAACTGACTTGCTGTTGACATTGGAGAAACCCTATAACCTTGCTAAGTCTCAGTTTTTTCCATTTCCTAAAATAGGATTGTCAATATCTCTATCATAGTGTTGTAGTAAAGGTTCAATGAGATATTGCAAGGAAAGTGACTACCACGTAGTAGGCCCTCCTTAAATGCTACTTTCCTTCTTTTCTCTAGTTCTTCTTCAGTTGTCATATGGTCATGTGATTACCTGTGTTGGGTGTCTGCGGAAATTGAATTCCTTAGTTTCTGGTAATACAACAAGCTTCCACCCTTCACTTCATGATCTTCTATCTGAATTCTTCTTCCACTGTGTACATTTAATCATTTCCACAACTTCAGCAGCCCAAGATAGGAGCCCATCGTTCCCAGAGTCACTGGTTCCTGAGGTCTGGGATGGTGGAAGCACTGCTTTGGTTGGTACTGCCAATGGATTCCAGGAATGAGCTGGATGTCAGTTCATGGAGAATTCCCAGGGAAGAGCCTGGAGCTCAGGGCTGCTGAGTCATGGCTGTGGCTTCACACTGCTGTCTTCACTACCCGTATCACCTCCACATGGCCCCCAGGCTGAGCTGCTGCTCTCCTGTCTCTGTTCAGAATACCTTCTGTGCCTTTTTGCTTATCTAGTTCAAATCCAATGAATACCATGCTCTTGTTTTGCCCTCCCAACACTCTGCAAATCACATAGGGCAGAGATAATTATTCTGAAAAACTCAGGGGCAGAAATATTAAGTGACCTGCCCAAGGTCACCAAGAATGGGGATAAGAACCCAGGTTTTGTGAACACCCAGTCCAGTACTCCTACTACCTTTTCCTGATATCCTTAGGAGCGGGATCCATGGGAAGGGACCTCAGACCCCTAGTGGGTTAGCAAAACCCCGGAGGTGATTGCTTTGATTTATTATTGTAAATAAACCCAGTGATTGGGGAAAGAATGTAATGTTTTCCAAAAGATACAGACATTATTTGAGTTCAAAGTGCTTCCAGTTTCCATTCAGTTACACAATAAATTCTGAGAAAACAAAGTAGGTGTTTACTCAGAAATAAAGAGACTATTCAGTCTCTATTTGCTCAGTGAAATCTATTTTCCAGAGCTTCTTGCAGTTCTGTGCATGTTGTACTGGAAAGGACATGGGTTATGGAATCAAATCCACTTCGATTTGAACCTCAGTGCAACCATTTCCTCAGCTCTGTGAGCTTGGGCACTTCCCTTGACTTCTTAGAGCCTCAGGTTGCTAATCCATAAAATGGAGATTATAACACCTTTGAAGTGAACCCTGTACAGGTTAGGAGATGCCCTTCGTATTAGACTATGCTATGCGTGGTGCCCCCAGAGTTGTGTCTCATGGTGGCCCTGGTTATGGTGAAGTTAAGTGAAATAACATCTAGCGTGCTTAATGAATTTTTGTTTCCATTTCCTTAGTTGGCTACATGTCTGCTATCTTACCCAGAATTCCTAGCCTCTATCATGAGGTGAGTCAGCTTCCTGTCTCAGCAGTGCTCTTCTTGCAGGGCACTGCACAAAACTGTGGTGGAGATAACCCTCGATCTTCTCATGCAGGAGTCCAGCATCGCAGCCCTTAGAGAGATACATCAGAAATCTATGGCATCATCTATAACGAGAAGTCTTTTTCTGGCCATTTTGAAGGGGTGTTGGGCCACTTACTATTTTAGGAAGTTTAGGTCTGGTGATGTAAAACAGTCAGCCTGCTTTTTTTTATTCTATTTTTTTTTCAAGCATGCATGGCTTCATTTAACAAATGTTACAAGGCCCTAGGAACTGAGTGATTTGCAAGATGTGGTTTCTGACTTCAAGAAACTCAGAGTGCAGTCAGAGAGGTAGACCAAGGCAACCAGAAACTAATATTCAGCATAGAAAAAGTAATGATGGGAGGACATATAAAGTGTTCATGGCTCAAGAGGAAGAAGGGAGTGGAAGAGTGGAAGAGGAAGAGGGACTGCTGTCCACGTTCAAAGCCCAAATTGAGTCTGACTTTTGTCGAGAATTGCTTAACAGGCTGCAGAGGTGGCCAGGAGGTAGACCAGGGCTGGAATTCAAGTCACCTCATTTCAAATCTATTGCTCAGTCCATCGCTCCGCCTCATGCCACATTGGGTTTTTCTTTACATCATTTGTTTTTCCTTGTCTCACTTTTTTTAG
Seq C2 exon
GCTTGTTTTCCTGCTCAGAACAAAGTGACTTCCCTGAACACATCTTCATTATGATTCACACCAACCTGAAGAAAAAGTTCAGCTGCTGCGTCCTGGTCTTTCTTCTGTTTGCAGTCATCTGTGTGTGGAAGGAAAAGAAGAAAGGGAGTTACTATGATTCCTTTAAATTGCAAACCAAGGAATTCCAGGTGTTAAAGAGTCTGGGGAAATTGGCCATGGGGTCTGATTCCCAGTCTGTATCCTCAAGCAGCACCCAGGACCCCCACAGGGGCCGCCAGACCCTCGGCAGTCTCAGAGGCCTAGCCAAGGCCAAACCAGAGGCCTCCTTCCAGGTGTGGAACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTACCTAAGCATGAACAAGTACAAAGTGTCCTACAAGGGGCCAGGACCAGGCATCAAGTTCAGTGCAGAGGCCCTGCGCTGCCACCTCCGGGACCATGTGAATGTATCCATGGTAGAGGTCACAGATTTTCCCTTCAATACCTCTGAATGGGAGGGTTATCTGCCCAAGGAGAGCATTAGGACCAAGGCTGGGCCTTGGGGCAGGTGTGCTGTTGTGTCGTCAGCGGGATCTCTGAAGTCCTCCCAACTAGGCAGAGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849:ENST00000169298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.095
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(26.9=34.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains