HsaINT0159833 @ hg19
Intron Retention
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:HGNC Symbol;Acc:10860]
Coordinates
chr3:186756530-186761098:+
Coord C1 exon
chr3:186756530-186756661
Coord A exon
chr3:186756662-186760441
Coord C2 exon
chr3:186760442-186761098
Length
3780 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTGTCTCACTTTTTTTAGGCT
3' ss Score
10
Exon sequences
Seq C1 exon
ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGGGGGATTAGCCAGAAGCAG
Seq A exon
GTAAGGAACACACAGAGGCATGGGCTAGCAAAGGGGTACATTCCTGAGTAAAAGCTGGTGTGGCAGATGTCCTGGCAGGGAATCTCAGGATCTCAGTATCTGGCTCCAGCTTTGCTGTTTTCTTTTTGTATGTATTTTTTAGTCCTCTTTAACTGCTGATTCAATGTGGGTTTCATTGGGGGGTGTAGAGAAATGGCTTGTCCATTTCTATTAACTATATAAGATTTAAGTTATTCTGTATTTCAGTCAACCATTCTGAGTACCTACTACCTGCCACGAATGCAACTGGTACTGAGTATGTCATGACGGGTGGGTCGGGACAGGATTTCCTTGCTTTGAGCATTGATTTCTGCCGGTTCAGTGTTGGCCAGTTCTTTGAAGGTGATGATGCAAGTCGCTGTGTTCTTCCTCTAGAAGCCTCGTGATGATTGTAAAGATTCTCTGATACAATTGCATCAGTTCAATAATCTTTCATTGAGTATCCGCTCTGGTCCAGGCACTGTGCTGGGTACTAGGGTTTCAGAAAGGATACCAGGAGGAGTTTTCCTTGAGCAGCAAAGTCAGGCATGAAAAGCAAGCATTACAAAGCACTGGCTGGCAGCAAAGGGGAGCAGGGATAGTGCGGAAGGGGAGGTGGCCTCCACTGACCTTCAGAAGCAGAAAGGTGATGCTGTCAGAGCTGGCAGGCACATGGACAAGGAGAAAGAGTGCAGCAGTGCAGACACCTGGAGGCTTAACACAGTCTGGTGTAATTGGAAAATTCAAAGCTTAGTGTGTTTTTCCAAAACATTTGTAGAGAAAAGTTTGCTACTCTTTTCCCTCGGTTGCGCCATTTAGAGAAAGTTTCTTCAGCCTCTGCCTTCTTCAGACAATTTGAGAGATGAGAAAGGGTCTTGCAGTTATAAGTGCCTGTGACCAGAAACTCCAGCCACCTGGTGGACTTGGAGCCTCAACCAAGGGTGGTGTCAAGGGACCACATGAGCCCTTATGTGAGATTTCAGATGAGTGCCCTGAGGCCATGACAGAGCACAGGCTGTGAAGGCTGAGGCTGTCTGATGGTTGCAAGACTGTCGCTAGACCCAGCTGTTTGGAGGAACTCTTCTTTCCTGGGAAACCACACCTTGGAGAGTAGGTACTGGGCAGCTGCTGCCTGAGCCTCCACTCCTGTGACAGTGAATCAGGCCCTTCCTGCCATCTTGTTTCATTCAGACATGTGAAAGTCAGGTTCTAAGTCCACTATTTCCAAATCACTCATGCAACTTTGAAAATTATTTGTATTTCCAAACCTCACTATACTCAGCTATAAATGGAGCTCATAAAATCTGCTGTGCTTATCTCACGGGAGTATAATAGGTCTGTAAAACCTTACCAATACGGAAAGTACCTGAGTGTTACCACTCAGTGCACAGCAGGGATGGCAGGTGCAGCACTGATGGTGAAGGTGGCTTGTCTGCGACTGTCTGACAGACGAAGTTGCCTCTCTAGTGACCTTGAGTCCGACTTGATCACACTGACTTCTCACTGTCCCTTATCACAGATGCATGTCCTTGGGTGGAAAGATGATGAACTTTTAGAGTCAGACAGACCTGGGCTGGAATTCTGGTTCTAGAACTGACTTGCTGTTGACATTGGAGAAACCCTATAACCTTGCTAAGTCTCAGTTTTTTCCATTTCCTAAAATAGGATTGTCAATATCTCTATCATAGTGTTGTAGTAAAGGTTCAATGAGATATTGCAAGGAAAGTGACTACCACGTAGTAGGCCCTCCTTAAATGCTACTTTCCTTCTTTTCTCTAGTTCTTCTTCAGTTGTCATATGGTCATGTGATTACCTGTGTTGGGTGTCTGCGGAAATTGAATTCCTTAGTTTCTGGTAATACAACAAGCTTCCACCCTTCACTTCATGATCTTCTATCTGAATTCTTCTTCCACTGTGTACATTTAATCATTTCCACAACTTCAGCAGCCCAAGATAGGAGCCCATCGTTCCCAGAGTCACTGGTTCCTGAGGTCTGGGATGGTGGAAGCACTGCTTTGGTTGGTACTGCCAATGGATTCCAGGAATGAGCTGGATGTCAGTTCATGGAGAATTCCCAGGGAAGAGCCTGGAGCTCAGGGCTGCTGAGTCATGGCTGTGGCTTCACACTGCTGTCTTCACTACCCGTATCACCTCCACATGGCCCCCAGGCTGAGCTGCTGCTCTCCTGTCTCTGTTCAGAATACCTTCTGTGCCTTTTTGCTTATCTAGTTCAAATCCAATGAATACCATGCTCTTGTTTTGCCCTCCCAACACTCTGCAAATCACATAGGGCAGAGATAATTATTCTGAAAAACTCAGGGGCAGAAATATTAAGTGACCTGCCCAAGGTCACCAAGAATGGGGATAAGAACCCAGGTTTTGTGAACACCCAGTCCAGTACTCCTACTACCTTTTCCTGATATCCTTAGGAGCGGGATCCATGGGAAGGGACCTCAGACCCCTAGTGGGTTAGCAAAACCCCGGAGGTGATTGCTTTGATTTATTATTGTAAATAAACCCAGTGATTGGGGAAAGAATGTAATGTTTTCCAAAAGATACAGACATTATTTGAGTTCAAAGTGCTTCCAGTTTCCATTCAGTTACACAATAAATTCTGAGAAAACAAAGTAGGTGTTTACTCAGAAATAAAGAGACTATTCAGTCTCTATTTGCTCAGTGAAATCTATTTTCCAGAGCTTCTTGCAGTTCTGTGCATGTTGTACTGGAAAGGACATGGGTTATGGAATCAAATCCACTTCGATTTGAACCTCAGTGCAACCATTTCCTCAGCTCTGTGAGCTTGGGCACTTCCCTTGACTTCTTAGAGCCTCAGGTTGCTAATCCATAAAATGGAGATTATAACACCTTTGAAGTGAACCCTGTACAGGTTAGGAGATGCCCTTCGTATTAGACTATGCTATGCGTGGTGCCCCCAGAGTTGTGTCTCATGGTGGCCCTGGTTATGGTGAAGTTAAGTGAAATAACATCTAGCGTGCTTAATGAATTTTTGTTTCCATTTCCTTAGTTGGCTACATGTCTGCTATCTTACCCAGAATTCCTAGCCTCTATCATGAGGTGAGTCAGCTTCCTGTCTCAGCAGTGCTCTTCTTGCAGGGCACTGCACAAAACTGTGGTGGAGATAACCCTCGATCTTCTCATGCAGGAGTCCAGCATCGCAGCCCTTAGAGAGATACATCAGAAATCTATGGCATCATCTATAACGAGAAGTCTTTTTCTGGCCATTTTGAAGGGGTGTTGGGCCACTTACTATTTTAGGAAGTTTAGGTCTGGTGATGTAAAACAGTCAGCCTGCTTTTTTTTATTCTATTTTTTTTTCAAGCATGCATGGCTTCATTTAACAAATGTTACAAGGCCCTAGGAACTGAGTGATTTGCAAGATGTGGTTTCTGACTTCAAGAAACTCAGAGTGCAGTCAGAGAGGTAGACCAAGGCAACCAGAAACTAATATTCAGCATAGAAAAAGTAATGATGGGAGGACATATAAAGTGTTCATGGCTCAAGAGGAAGAAGGGAGTGGAAGAGTGGAAGAGGAAGAGGGACTGCTGTCCACGTTCAAAGCCCAAATTGAGTCTGACTTTTGTCGAGAATTGCTTAACAGGCTGCAGAGGTGGCCAGGAGGTAGACCAGGGCTGGAATTCAAGTCACCTCATTTCAAATCTATTGCTCAGTCCATCGCTCCGCCTCATGCCACATTGGGTTTTTCTTTACATCATTTGTTTTTCCTTGTCTCACTTTTTTTAG
Seq C2 exon
GCTTGTTTTCCTGCTCAGAACAAAGTGACTTCCCTGAACACATCTTCATTATGATTCACACCAACCTGAAGAAAAAGTTCAGCTGCTGCGTCCTGGTCTTTCTTCTGTTTGCAGTCATCTGTGTGTGGAAGGAAAAGAAGAAAGGGAGTTACTATGATTCCTTTAAATTGCAAACCAAGGAATTCCAGGTGTTAAAGAGTCTGGGGAAATTGGCCATGGGGTCTGATTCCCAGTCTGTATCCTCAAGCAGCACCCAGGACCCCCACAGGGGCCGCCAGACCCTCGGCAGTCTCAGAGGCCTAGCCAAGGCCAAACCAGAGGCCTCCTTCCAGGTGTGGAACAAGGACAGCTCTTCCAAAAACCTTATCCCTAGGCTGCAAAAGATCTGGAAGAATTACCTAAGCATGAACAAGTACAAAGTGTCCTACAAGGGGCCAGGACCAGGCATCAAGTTCAGTGCAGAGGCCCTGCGCTGCCACCTCCGGGACCATGTGAATGTATCCATGGTAGAGGTCACAGATTTTCCCTTCAATACCTCTGAATGGGAGGGTTATCTGCCCAAGGAGAGCATTAGGACCAAGGCTGGGCCTTGGGGCAGGTGTGCTGTTGTGTCGTCAGCGGGATCTCTGAAGTCCTCCCAACTAGGCAGAGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849-ST6GAL1:NM_173216:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.093
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(26.9=34.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)