MmuINT0153217 @ mm9
Intron Retention
Gene
ENSMUSG00000022885 | St6gal1
Description
beta galactoside alpha 2,6 sialyltransferase 1 [Source:MGI Symbol;Acc:MGI:108470]
Coordinates
chr16:23317637-23321751:+
Coord C1 exon
chr16:23317637-23317771
Coord A exon
chr16:23317772-23321105
Coord C2 exon
chr16:23321106-23321751
Length
3334 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTGTGTGTGTGTTTTTATAGGCT
3' ss Score
10.21
Exon sequences
Seq C1 exon
ATGGTTTTTGATCATCCTGTGAAAAATGAGCCTTGGCCTCCAGACCTAGTAAAGTAAACCTCTTTCCCATGGAGAACAGTGCTGGCTCCTGAGGACCTGGAGGGCCCAAGCCCCAGAAGGATTAGCCAGAAGCAG
Seq A exon
GTAACAAGCTCCTAGAGACCTGAGAAAGTAGAGGGAGACAATCCCGAGTAAAAAGACAGGGGCCAGACTGTGCTGGCAAGGGCTCCACTCCCCACTGTCTCACCACAGCCTCTCTGCTTTCTCTCTTCTTTCCTTTCCTAGTCTGCTAAATGCTTGTTTAGGGAGGGCCAAGATAGTGTGGAGGACAGGCTTGTCCATCTCTGTAAGCTGCAGATAGAAAGTCTGGAGTGTTCTATAATTGATAGCCTTCTATGAGAATGTTTATATACCTTTGACATTTGACGTTAAACATGCTTCAAGGCGTAGGAAGGCAGAACTTCTTATTTATAGAGGCACTCTTTAGTGTTTGTCTAGTGTTGGCATGGTCTCTGTGGGTGGTAATGTTCAGGACTGTAGTGTTCTTTTTCTGTAAGTCTCTTCCAGGTATTACATTTATTGATACAGTTTCTTCAGCTTCATAACCCTTTACTGAGCCTGACCATGTTCCAGATTCGGTTCTGGGGCCAATTTTTTTTATTGTAGAGAAAGGATACAAGGAAGCATGCTCTGTTGGCATAAGGGCTAAACACTGGTTGCTAACAAGTAACAATTGTGGTAAAAGTCAAAGGCATCAGTTACAAAACCTGGAAGCTTTACAAAATAAGTCTGGTGATACGAAAATTCACAGGTCGCTCCTCTTTTCCCTGAGGTAGGTATTAGGTGTGGCCTTCTTTGGTGTCTTTCTTGCTCAAAGAGCTAGGCAGGTGAGAATAGGCCCTTCGGCTCTGATGGCTGTGACTGGAAACCCAAGCCGATCTTAGGTGATGGCAATTTTGGAGGGACCACACAAGCCCTGATGGAAGGTTCCAGATGAGTGTGTTAAGGCCATTTTATTATTCAGGGTTCTCTAGAGTCAGAGAACATATGGAATGAATCTCTTCTATATATGTATAAAAAGGGAATTTTTTGGAATGACTTACAGGCTGCAATCCAACTAATCCAACAATGGCCAACTGTGCATGGAAAATTCAAGTCTAGTAGTTGCTCGGTCCCCGAGGCTGGGTGTCTCAGGTGTTCTTCTGTATATGTATAAGTAGGCTTCAGTGTCATAGAAGGATCCAGATCACAGGTGTGCCCTCCATGTCCGGACTGTACTTAATTCCAGATATAGTCAAGTTGACAACCAAGAAAGGTTGTGACAGCCATGAAGACCCAGGCTAGCTGAGGGCTCTGAGACTGTCCTTGAGGTCATCCGTGGAAGCTGCTTTTCCCTAAGCATCCCAGGAAAGGCAGTGCCATGCTTCTCTGAGAAGGAGCCTTTGCTGGCATCACCTCTCCTCCAGACTTGCAAGCCACCTTCCAGCTGCTCATTCACAAACGCCATGTCCATGTCACTCACTCAAGTTCACAGTTCCATGTGTTTCTCAAACCTGCACATGGAGCTTATGGGAGCTTCACTGTTTATTTTAAAACACTGCACTGGATTTTATAACATGTAAGAGCCCCTGGTCAGTGGTGCCCACCAAGGGTGACTGGCGGAGGACACTTTGCTCTGAGTGCGAGTTTCATCTCTGGGCTCTCTGATTTCTGAGTTCTGATGGTCACCACTTACTATTTATTAACCCCGATTCAAATTTTCTATCCTTCAATGCAAAGACTATAAACCAGTGGTGTTTTGTTTGTTTGTTTGTTTCCAATCTTCCTGAAGCTGTGACCCTTTAATACAGTTTCTCATGTTGTGGTGACCCTCAACCATAAAATTACTTCATTGCTAATTTATAGCTGTGATTTTGCTACTGTTAGGAATGTAAATATCTAATATTTAGGATATTTTGATATGATATGACCCTCAGAGGGGTTGAGACTCACAGATTGCGAACCACTGCTATAAACAAACCATTAGATACAGGCTAACCTGGATTGGAATCCTGATTTCACCTGGTGGTGTGGTGACTCCGTGACATTGAAGACTTGCTAAGCCTCACTCCCGTCATTCTAACACAGTTGTGAAAGCTTACTTTGTAGTGTTTATATTTGGTGAGAGGATGTGGATACAGTGTCACAAGGTCATGTGGTCAGTGATAGTGACCTGTCCGGGGGATATTTAATTAATTTGTTCTCCTGTGATGTAACAAGCCCTCCACCTCCTACTTCATGACATTGAATCCGAATTCCTGTCCATATGTGTATGTCACATCCCTTCCAAAATATCATCCATTCCATTTTCGGTCACCCACATCACTCCTGACAAGGCCCTCTTGCTAAAGGGCTCTCCTCCTTTCTTTGCTCAGAACAACTCCCCAGCCGTTGCTTTCACCGAGTTCCAGCTGGCGAGCACATCCTTTTATTTAACACTCCCAATTTGGCACAGATGAAATGGGCAGAGATGACTGTTCTATAGATACTCAGCAAGAATGGAATCGAGACCCCAGGATTCATGAAATTTCCAGTCTAGAACTCCTACTGATTTATCTCAGACATCCTTGGGAACAAGCTTGGTAGGAAAGGACTTCAGACTCACTCACTGGGTGAGCAAAGCCCCAGGGGCAGTTGCTTTGAGTCATCCTGGTGAGTAAACTCGGGAGAGGAAAGAATCCAGTGTTTTCAAAGGATACAGACCTTGTTTGTACAGAGCGTTTGTTTCTATCTTCTGCTTTGTTACTCAGTGGATTCTGAGAAAGCAAAGGCATGAAGGGCCCAGATATGAAGGGCCATCCTAGCTATCTTACCAAGATTTCCTCTCTACTGTTAATAAAACGATCTAGCTTCTCCTGTACACTGAATGGTGGACTGTGGGGCTAACCTTTGATCTAGAAGTCCTGGATTATAGCCCACATAGAACTGGATGCATGGGATGCAAAACAGGTGCATGGGACTTCTCTGGCTCTTTTAGCTGATGTAGGATTTAAGAGACTCTGTGTATAGACCAGTCAGCCTGTTTCCTTTTTACTGTTGCTTTCAAGTCTACGTGCCTTTGTTCTACAGAGAGCATGGGCTATGGTGTTTAAGGTTCCCTCTGGTCTAAGATTTTGGAGTGAGCTGGAGCAGAGAGTGGTAGAAGCTGAGTCATGGTGCACATAGGGTGGAAAGATGCATAAATTTTCACGACTCAATGAGATGTTCAGAGGAATGCTGCCTACAGTCAAAGTCCAAACTAAGGCTTGTTTCCCCGCTGTGGCTTGCTCAAGGCTGCAGAGTTGGTTCGAGGCAGCCATGGAGGGACTTCAAGCGTTTTTGTGCTAGACCTTATGCTTGATTCTTCGCTTGACCCATCACTCCCCTGCCCAATACTTTGGAATATACTCACCCTCATCTTTCTTCCCCTTGCTCTGTGTGTGTGTGTGTGTTTTTATAG
Seq C2 exon
GCTTGGTTCCTGCTCCGATCAGTGGCTCTCCTGCCCGTACCATTCATTATGATTCATACCAACTTGAAGAGAAAGTTCAGCTGCTTTGTCCTGGTCTTTCTCCTGTTTGCCATCATCTGCGTGTGGAAGAAAGGGAGCGACTATGAGGCTCTTACATTGCAAGCCAAGGTATTCCAGATGCCGAAGAGCCAGGAGAAAGTGGCCGTGGGGCCTGCTCCCCAGGCTGTGTTCTCAAACAGCAAACAAGACCCTAAGGAAGGCGTTCAGATCCTCAGTTACCCCAGGGTCACAGCCAAGGTCAAGCCACAGCCCTCCTTGCAGGTGTGGGACAAGGACTCCACATACTCAAAACTTAACCCCAGGCTGCTGAAGATCTGGAGGAACTATCTGAACATGAATAAATATAAAGTGTCCTACAAGGGGCCGGGACCAGGAGTCAAGTTCAGCGTAGAGGCGCTGCGCTGCCACCTTCGAGACCACGTGAATGTGTCTATGATAGAGGCCACAGATTTTCCCTTCAACACCACTGAATGGGAGGGTTACCTGCCCAAGGAGAACTTCAGAACCAAGGCTGGGCCTTGGCATAAGTGTGCCGTCGTGTCTTCTGCAGGATCTCTGAAGAACTCCCAGCTGGGTCGAGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022885-St6gal1:NM_145933:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(27.8=36.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: