BtaINT0141841 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67700050-67700730:+
Coord C1 exon
chr5:67700050-67700186
Coord A exon
chr5:67700187-67700615
Coord C2 exon
chr5:67700616-67700730
Length
429 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
CTTATGGACTATTGTTATAGGTA
3' ss Score
5.17
Exon sequences
Seq C1 exon
AATGCTTCCCTACAACACCTGTTGTCGACCACCTCAAATCTTACTGTCCTTGTGCCCTCCCGACAAGCCATTGCGGACATGGACCAAGAAGAGAAAGCCTTTTGGTTGACCAAGAGCAACATCCCTGTCCTCATAAA
Seq A exon
GTACGTATTATGTATTTTGTTCTTCACGATGTCTTACTAGCATCAGTGTGAATGAAGTGCAGTGGAGGTGGGCCCCATGGGCCTTGAGGTCCATGCAACTGAACATGTTCTAGGGCTGCCGCTGCCCCGCTCTTTCCCCCAGGATGGAAGTAGTCAACATGACTGACAGCCAACTCTGCTAACTGCTTTTACATACAACCTAGTTAATCCTATCTGTGAAATAGACATTATAATTATTCCCATTTTACAGATGTGGAAACCAAGGCACAGAGTGATTAAATAACTGACCCCAGAGGCCATGGCCAATAGTTTCAAGAGGAGATTTTGAATCTGGTAGTCTGGCTCCAGAACCTACCCTCTTAACTACTCCCGACACCACTGTCTCAAGCATCAATATCTCATTACAGCCCTTATGGACTATTGTTATAG
Seq C2 exon
GTACCATACACTACTGGGCACATACGGAGTGGCCGATCTGCAGGCCCTGTCACCTTCTGACATGCTGGCAACATCTTTGCAGGGCAACTTCCTTCAGCTGGTGAAGGCAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(36.0=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCTACAACACCTGTT
R:
CATCTGCCTTCACCAGCTGAA
Band lengths:
248-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]