RnoINT0144354 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27451113-27451981:-
Coord C1 exon
chr7:27451845-27451981
Coord A exon
chr7:27451228-27451844
Coord C2 exon
chr7:27451113-27451227
Length
617 bp
Sequences
Splice sites
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
3' ss Seq
CTTGTGATCTGTTCTTTTAGATA
3' ss Score
9.9
Exon sequences
Seq C1 exon
AATGCTTCCCTGCAGTCCGTGCTGTCTACCACCTCGAATCTCACTGTCCTTGTGCCATCCCGGCGAGCCTTTGAAGACATGGACCAGAATGAGAAAAGCTTCTGGCTGTCACGGAACAATATTCCAGCCCTGATAAA
Seq A exon
GTGGGTGTCATTTACCTTATCTTCCACGGTATATGACTAGCATCCGGGGTGATCATTCCTTAGTTCTATGTAAAGAAGCCACAAGATCCTTCACTTCGTATGGTGCTCCTTGCAACCCTCCCCTAGGTCAGGAAAAGTTATCTGGTAACAGCTGACTCTAAGCCAGTGCTTCTCACCCTTCCTAATGCCGTGACCCTTTAATACAGTTCCTCAGGTTTCTGCTCCATGGACCGACCCCCAACCATAACATTATTTTTCTTGCTACTTCATAACCGAGGTTTTGCTATATATGTAAGATATCTGATAGATGACACACACCCCCAAGAAATCGTGACCCACAGGTTGAGAACCACTGCAAAACCAAGCAATGTGCTTTGAATAGCATTCAGTTAACCCTCCCAGCACCTCTGAGATGGGTGTTACAATTATTCCCACTTGACAGATGTGGGAAGCGAGGTAGAGTGGTTAATGACTAATTCTAGACAAGGCTTGCCTCTGCAAGGGTGAATGTGAAGTCAATATGGTAATCAGGCCCCAGAGCATATTCTCCTGTTCAGTGAAGCTACCATGTGCATGGATGTTCGGATATTCGTGATTCTTGTGATCTGTTCTTTTAG
Seq C2 exon
ATACCACATACTACTAGGCAAGTATGGAGTGGCTGATCTGCAGGCCCTGTCATCACCTCACATGCTAGCGACATCCTTGCAGGGAAACTTCCTTCAGCTGGACAAGGCAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(36.0=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTCCCTGCAGTCCGT
R:
CATCTGCCTTGTCCAGCTGAA
Band lengths:
250-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]