GgaINT0112633 @ galGal4
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54962009-54962631:-
Coord C1 exon
chr1:54962495-54962631
Coord A exon
chr1:54962124-54962494
Coord C2 exon
chr1:54962009-54962123
Length
371 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGT
5' ss Score
7.46
3' ss Seq
ATCCAGTTAATTTCTTTTAGGTA
3' ss Score
6.03
Exon sequences
Seq C1 exon
GATGCTCAGTTAAACTCAGTGTTGTCCACCACCTCAAATCTAACTGTCCTCGTGCCTTCTCTTCAAGCAATTGAAAACATGGATGAAGATGAAAAAGATTTTTGGATGTCAAAGGGTAATATCCCAACCCTACTGAA
Seq A exon
GTACGTTAAAGGTTTTGTTTTGTTCTTTGAATTGCTTGTCATTCCAAACAAGTCTTTGATATGAACTCCCCATAGCAAGACAGCTCTGATATTTTTAAGGGAGGCACACAGTATTTTACTTTTAGTTACAGTACTATAAATCTCTGTAGCAGCTCCACTGAAAACAAAGACATTATTTGTATCATGCCAGAAATATTTAAAGGCTAAGCTAAGATCAGAACATAGCTGAACTAGGCATTGTACAAACCATTTCTGCTTTAAACCACGGTTTTAGACACGATAAATGTATTTACTGGGGGGGAGGGGAGAAGCAAGAAAGAAAAGAAACTGAGAAAAATGCAAAACCTTAAAATCCAGTTAATTTCTTTTAG
Seq C2 exon
GTATCATCTATTGACAGGAGCTTACAACTTTGCCGATTTCCAGAATTTATCATCTTCTGATACGCTGCCAACATCCCTACAGAGCAACTTCCTACACTTATCTAAAGAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(36.0=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCAGTTAAACTCAGTGTTGT
R:
TTCTTTAGATAAGTGTAGGAAGTTGC
Band lengths:
246-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]