MmuINT0153410 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86384827-86385748:-
Coord C1 exon
chr10:86385612-86385748
Coord A exon
chr10:86384942-86385611
Coord C2 exon
chr10:86384827-86384941
Length
670 bp
Sequences
Splice sites
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
3' ss Seq
CCTTATTATCTGTTTTTTAGATA
3' ss Score
9.68
Exon sequences
Seq C1 exon
AATGCTTCTCTGCAGTCCATGCTGTCTGCCACCTCGAATCTCACTGTCCTCGTGCCATCCCTGCAAGCCATCAAGGACATGGACCAGAATGAAAAAAGCTTCTGGTTGTCACGGAACAACATTCCAGCCCTGATAAA
Seq A exon
GTGGGTGTCATTTACCTTATTTTCCATGCTATGTGACTGGCATCCAGGGTGATCATTCCTTAGTTCAATATAAAGAAGCCACATGATCCTTCACTTCCTAGGATGTTCCTAGCAACCCTCCCCTGGGTCAGGAAAAGTTATCTGTTAACAGCTGACTCTAAGCCAGTGGTCCTCAACCTCCCTAATGCTGTGACCCTTTAATACAGTGCCTCAGGTTTCTGCTACATGTGGTGACCCCCAATCATAAAATTATTTTTGTAATAATTTGCTATTTCATGACTGTAGTTGTGCTACTGTTATGAATAGTAGTATAAATATCTGATATGTAGGATATCTGATGTTACCCCCCCCCCCTGCTAAAGGAGTTGTGGCGCACAAGTTGAGAACCACTGCTAAACCAAGCAATGTGCTTTGAATATCATTCAGTTAACACTCCCAACACCTTTGAGATGGGTGTTACAATTATTCCCATTTGACAGATGTGAGAAGTGAGGCAGAGTGGTTAATGGCTAATTCCAGCTAGGGCTGACCTCCGCAAAGGCAAATGTAAAGTTTAAGTATGGGAGAATGTGAAGTTTGAATATGGTCATCAGGCCCCAGAGCTTATTCTCCTGTTTAGTGATACTATCTTGTGGATGGCTATTTGTGATCCTTATTATCTGTTTTTTAG
Seq C2 exon
ATACCACACACTACTAGGCACATACAGAGTGGCTGATCTGCAGACTCTGCCATCCTCTCACATGCTAGCGACATCCTTGCAGGGAAGCTTCCTTCGCCTGGACAAGGCAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(36.0=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTCTCTGCAGTCCATG
R:
CCCATCTGCCTTGTCCAG
Band lengths:
252-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: