BtaINT0143076 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34701526-34701813:-
Coord C1 exon
chr3:34701718-34701813
Coord A exon
chr3:34701584-34701717
Coord C2 exon
chr3:34701526-34701583
Length
134 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
ACTTTCTAATAATTTGACAGGGA
3' ss Score
5.66
Exon sequences
Seq C1 exon
ATATAAGACAGATGGGAAGGAAAAGGAGGCAATCCTTGAAGAAGATGATGACCTCTGGGTCAAAATTCGGCATCGCCATATTGCAGTTGTATTAGA
Seq A exon
GTATGTGAACCTGTTTAATTTTTGTTCCATATTTAAATACTAATTACAGAGTACTAATAGTACATTTTTTAATCTTAAGATACTTTTGTGAATTAAACTTTAGAAATTTAAAGAACTTTCTAATAATTTGACAG
Seq C2 exon
GGAAATTCCCAAGCTTATGAAGGAAATTTCATCAACAAAGAAAGCAACAGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330:ENSBTAT00000009642:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.9=100)
A:
NA
C2:
PF0099518=Sec1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATAAGACAGATGGGAAGGAAAAGG
R:
CTTTCCTTCTGTTGCTTTCTTTGT
Band lengths:
154-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]