GgaINT0036886 @ galGal4
Intron Retention
Gene
ENSGALG00000002001 | STXBP3
Description
syntaxin-binding protein 3 [Source:RefSeq peptide;Acc:NP_001073202]
Coordinates
chr8:1278199-1279147:+
Coord C1 exon
chr8:1278199-1278294
Coord A exon
chr8:1278295-1279089
Coord C2 exon
chr8:1279090-1279147
Length
795 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
TATTTTCAATTTTTGCACAGGGA
3' ss Score
6.81
Exon sequences
Seq C1 exon
ATACAAAGCAGATGGGAAGGACAAGGAAGCAATTCTGGAAGAAGATGATGAGCTTTGGGTGAAGATTCGGCACAAGCATATTGCAGATGTAATAGA
Seq A exon
GTATGTATTTGAATTAATGAGCAGTAGCTAAAAGCACAGGTTACCAAGGCTGCTTTTAGAGGGGAGATGTCTGAGCTGTAAAAAAAAAAAAAACAAACAAACAAGGGAATCTTCCAGGGGAGGTTCAGGCTGGATGTTAGGAAATACTACTTGTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACCGACCCTGGTGGTGTTCAAAGAGCGTTTGGTTGTTGTGTTGAGGGACATGGCTTAGTGAGAACCATTGGTGATGGGCGAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATAACAACAAAAAAAAGTGGGAGTAGTGAACACAGCTTATAAAATAGACTTGATACTGTTGAATAATTGATGCCAAGAAGAAAGTGTACTTTCAGAATCAGTATGGATGAAGAAAATCTCCAGTATGTATGGAGAAAAGCAGGTCTGTTGACAGTCATTATGTTTTTGAGTAAACCTAAAGTAAAATATTTTCCCTAGAAATAACTGTAAGCTGGTTAAATCCAAAGGGATTTAGCAAGAAGTGCTAACAAGTTATTTGCATACTGTCATTAGTGGCAATAGTAAAAAAAAAAAAAAAAGTTTGTCTAATTTCAGTTTTCTCTACATGAGAAAAGCTTCTCTTTGAAGCTTTTCCTTTCAGTCAAAACTTCTCATGGCTCAGTTCCTATAAGACTGTACGAAAATACATAAGAACTGTGGTCCTGTTGTATCTGATTATTTTCAATTTTTGCACAG
Seq C2 exon
GGAAATATCTCAGCTGTTGAAAGAAGTTTCATCCAAGAAGAAAGCAGCAGAAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001:ENSGALT00000003116:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PD(2.4=37.5)
A:
NA
C2:
PF0099518=Sec1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]