HsaINT0161421 @ hg38
Intron Retention
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr1:108782422-108782706:+
Coord C1 exon
chr1:108782422-108782517
Coord A exon
chr1:108782518-108782648
Coord C2 exon
chr1:108782649-108782706
Length
131 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
ATTCTCTCACAATTTGACAGGGA
3' ss Score
5.3
Exon sequences
Seq C1 exon
ATATAAAACAGATGGAAAAGAAAAGGAGGCCATCCTTGAAGAAGAAGATGACCTCTGGGTTAGAATTCGACATCGACATATTGCGGTTGTGTTAGA
Seq A exon
GTATGTGAACTCATTTTAATTTTTGTTCCATAATTTTTAGACACTATGTGATAGTACATTTTGTAACCTTAAAATAGTTCTGTAAAGAATTACATCTTAGAAATTTAAAGAATTCTCTCACAATTTGACAG
Seq C2 exon
GGAAATTCCCAAGCTTATGAAAGAAATTTCATCAACAAAGAAAGCAACAGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266:ENST00000370008:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(10.9=100)
A:
NA
C2:
PF0099518=Sec1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGAAAAGAAAAGGAGGCC
R:
CTTTCCTTCTGTTGCTTTCTTTGT
Band lengths:
146-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains