GgaINT0036886 @ galGal3
Intron Retention
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1289201-1290138:+
Coord C1 exon
chr8:1289201-1289285
Coord A exon
chr8:1289286-1290080
Coord C2 exon
chr8:1290081-1290138
Length
795 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
TATTTTCAATTTTTGCACAGGGA
3' ss Score
6.81
Exon sequences
Seq C1 exon
ATGGGAAGGACAAGGAAGCAATTCTGGAAGAAGATGATGAGCTTTGGGTGAAGATTCGGCACAAGCATATTGCAGATGTAATAGA
Seq A exon
GTATGTATTTGAATTAATGAGCAGTAGCTAAAAGCACAGGTTACCAAGGCTGCTTTTAGAGGGGAGATGTCTGAGCTGTAAAAAAAAAAAAAACAAACAAACAAGGGAATCTTCCAGGGGAGGTTCAGGCTGGATGTTAGGAAATACTACTTGTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACCGACCCTGGTGGTGTTCAAAGAGCGTTTGGTTGTTGTGTTGAGGGACATGGCTTAGTGAGAACCATTGGTGATGGGCGAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATAACAACAAAAAAAAGTGGGAGTAGTGAACACAGCTTATAAAATAGACTTGATACTGTTGAATAATTGATGCCAAGAAGAAAGTGTACTTTCAGAATCAGTATGGATGAAGAAAATCTCCAGTATGTATGGAGAAAAGCAGGTCTGTTGACAGTCATTATGTTTTTGAGTAAACCTAAAGTAAAATATTTTCCCTAGAAATAACTGTAAGCTGGTTAAATCCAAAGGGATTTAGCAAGAAGTGCTAACAAGTTATTTGCATACTGTCATTAGTGGCAATAGTAAAAAAAAAAAAAAAAGTTTGTCTAATTTCAGTTTTCTCTACATGAGAAAAGCTTCTCTTTGAAGCTTTTCCTTTCAGTCAAAACTTCTCATGGCTCAGTTCCTATAAGACTGTACGAAAATACATAAGAACTGTGGTCCTGTTGTATCTGATTATTTTCAATTTTTGCACAG
Seq C2 exon
GGAAATATCTCAGCTGTTGAAAGAAGTTTCATCCAAGAAGAAAGCAGCAGAAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001:ENSGALT00000003116:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.6=100),PF0263810=DUF187=FE(40.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(3.8=100),PF0263810=DUF187=PD(22.9=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]