BtaINT0143726 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101648940-101652781:-
Coord C1 exon
chr8:101652606-101652781
Coord A exon
chr8:101649065-101652605
Coord C2 exon
chr8:101648940-101649064
Length
3541 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
TTTTTTCTTTCCTTTTCTAGGTG
3' ss Score
14.73
Exon sequences
Seq C1 exon
CTGGGTTCTTTATGTAAATGGCAAGGAAAAAATAACAGACTGTCCCTCTGTGAATGACGGTAATTGGCATCACATTGCCATCACTTGGACGAGTACTGGTGGAGCCTGGAAAGTCTACATCGATGGGAACTTATCTGACGGTGGCATGGGCCTCTCTATTGGATCACCCATCCCTG
Seq A exon
GTACGTCTTAGCAAACAGCATATACTTCCATTCAATGCTAGAGGCGGTGGTGCTCTGATGAATAGCAAGTTTGCTAAGTTCTCTTTCCCATTTACCACCTCCTGATTATCCAGACTGAATTATTAGAAGCTTTTCCTAGGTGAGCTGTGTGACTGTATGAGAAATGCCTTTGGGATCTAAAATAAGACTACCAAGATGCATGCTGAACTGACTGCGTGATTACTAAATTGTCTTCCAAGAAGGAGATTAATTGCTGGTGTTTTGTTTGTTGGTTTTGTCTTTTTTTTTTTTTTTTTTTTAGGTTTGGTTTGTGATCAGTATACACACTAAACAAGTAGGTTCAGAATACAAGCTGGAGCACTGCTAATACTTCTCTATCTTTTATGCCCTTTTTCTCATAGAACTCAAACTCTCTTCTAAAAATACTTTTAAACAAATATTTAGAGAGTTGAGTTTTGAAGGAATGCAAAAGTATTAAGTGTTCCAGGGTTCTCGGCATTGTACCTGGCAGTAAGCCTACTCTATCTAGGTTCTTCTGTGACTTCTGTGACGTATGTCATGTGAGGAAGAACAGCTGGAGGCTCCCTGTAGTAAATAAGGAAACCTTAAAAGTGTTTCTGCAGGAAGTGGTATTATCCTGTGAAGTGAAGTGCTGGCTTCTTTTTGTGTTTAAAGTGTTGTTGTTTTTAACTCTCCCTTCTCTGGGTGGTGAGATTGCAGGTGGCTTTTATATTTCTTCTTGGTCCTTTTCTGATATTTTTATAATGAGCATTTATTTCATTTATGGTAAAAAAAAAAAGTTTCTATTTTAAAAGAATTGAAACTATAATAGTAGCTACCCACAGGGATGGTTCTCTGACCACAGCAATAAGAATGAATTATAGTCCATAACTATTGCAGAACTGCATTTGACAGACCCTAGTGAATGACTGACTGTGGTTTGGGTGACCAGATTTATTGAAGACTGTGTTAGGTGAGATAGAAATTCTTGGGAAAGGACCATTATTAGAGCAAGAATTAGGGGTAGAGGAAGATTCTGTATTTGGTTTTAGACATATTGAGTATGAATTTTAATCCCACAAATGTATGCAGCTAAAAACATAATTTGATACCATTTTATATCAAAATGACAGAACTGTCTTTTAGTGATAGGTTATGTTTGTCAAGAATTAAGCATGGTAAATGCTCTTATAGAGTCCTGGGGGGTGTGAACATTGATCCAGACTTTCTGGGAAGATATTTAGAAATATTTCATCAACAGCCTTAGAGAAACTCTTTGCATGGAACCAACAATTCTCTACCAGGAATTAATCAAAAAGAAAGAATCGGTGATCTGAACAAATATCTGTGTATCTATGAATTAGTTCAGCATTACCTCGGTACCGAGCCTGGAAACACCTCCAGTACCCAGTAAGAAATGGTTGTTAACTTAGTCAATTAAGAAAATTATGGATTGTTGCACATTCACATGATGAAGTAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAACCCTGGGATTTCTTTGGAAGGAATGATGCTACAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCAACTCGATGGACGTGAGTTTGAGTGAACTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGGGTGCTGCATTTCATGGGGTTGCAAAGAGTCAGACATGACTGAGCAACTGAACTGAACTGAATGGAACTGAAAACTCATGAAATGAAATTATGTTCAAGAAAAGCAAGCTTCCAACATCATGTGTAATAGGATCCTATGCTGTGTGTTTTAAAATCTCTCTCACACACACATACTAAAAAAATAATTTTAAAAACATATAATCTAGAAAGAAATACACAGAACTGTTAAGTGATTTTTCCTGAATAGGAAGAATTCCTTATACTTAATTTTTAAAAACGTTCTTCCATGTGTATATATTCATTTTTAATTATTAATTTTATAAGAGAAAAATATAGGTTGGGAAATCATGAATGAGGGCTCTACAGACATGGATTTGCAGGAGATCACATGGGAGAGTAAGTGAAGGAAGAAGAGATGAAGCCAGGGTAGAATCCTGGGTGCATCGGAATCTAAGAGGCAGGTGGAGAAGGGAGACAGAGGGTGAGTAGAAAGGCTCAAGGAGAACCAGGGGAGGATGCTGTCATGGAAACCAGCTGCAATCAGGAGGGCTCCTGGCAGGAAACAAGTGACACACACCAGAAGGATAACTGAAGAATTTAATGAAAGGATTGTTTTCAAAGATGTGGGCTTCCCAGCTAGTGGTAAAGAACCCGCCTGCCAATGCAGGTAGACGCAAGAGGTGCGGTTTCGATCCCTAGGTTGGGAAGATCCCTTGGAGTAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCTATGGACGGAGGAACCTGGCAGGCTGTGGTCCATAGGGAGACAAAGAGTCAGAACACAATTGAAATGACTTAGAATGCTGTCCTGGGCAAGGTTAAGAGAACCAAAATGAGGTAGTAAAATACCCATGCCTAGTAGCGATGGAAAGGCACAAGAGATGTACATGAAGTGACAGAGAGTGGGAGTTGTCACCAGAATGTAGGTGAACCTGTAGTGATGGGGAGAAATCACCCAGTGGGAGCAATGATGCAAGGCAGAGGAAAGCGGCCCCTTCCAGCCCCTTCCATCTGTTGCCTGGGAGAAGGTATCCAGGAAGTTAAACTTGTTTCTCATCCCACTTTCTTATCTTGGGCTGGTCTCCATTGGCCAGACAAACAGAGGCCAGAGGACTGAAGAAACCAGGTGGTGTAGTCCATGGGCATGAACCTTGCGGCCACAAAGCAGAGTGGAGAAAGGGGAAGGGTAGCTCTCGAGGGGTACAGACCTTTTTGAGTGCCAGGAAGGGCAGTTTAATAGAATGAAATGCTTCCAAGAAACAAGTGATACAGAGAAGTCACCAGAGGTGAATATTGAAGAGTTTCCATTGGATTGGGTCGTTAAGCAGCCACTGGAATGAATGTTCCTTGGAATTGGTAATAGAACTTTAAGCATTATAGGCTAAAGAATAATACGATGAAGAGCAGCTACTGGTAATCTGTCACGGAGGGTAATTTCCTAGAGCTAAAGAGGCAAAGTAGGACTTAACTACTTTGTTGACATAAAATATTATATACATATATATGTAGTTTTATAGTTAAATATGTATAAATCTAATCTTGTGTTCCAAATCCTCTTTGACTGATTTTTCAGTTGCTATATAAAATGTCGAACTCATCGTACTGTTAAATCATGCAGTGAATGTAGATAATTTAGCTTCTCTATAATTTCCCGTTTGTATAGGCTGTGCCTTCATTAAGTTAGCATTTTAGAAACAACAGCCAGGCCACTCTTCTTCCTTTTTTCTTTCCTTTTCTAG
Seq C2 exon
GTGGTGGTGCATTGGTTATTGGGCAAGAACAAGACAAAAAAGGAGAGGGATTCAACCCGGCTGAGTCTTTTGTGGGCTCCATAAGCCAGCTCAACCTCTGGGACTATGTCCTGTCTCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243:ENSBTAT00000001939:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0035412=Pentaxin=FE(30.4=100)
A:
NA
C2:
PF0035412=Pentaxin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]