HsaINT0162163 @ hg19
Intron Retention
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:15985]
Coordinates
chr9:113198660-113206000:-
Coord C1 exon
chr9:113205825-113206000
Coord A exon
chr9:113198785-113205824
Coord C2 exon
chr9:113198660-113198784
Length
7040 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTCTCTTTCTCTCTCCTTAGGTG
3' ss Score
14.28
Exon sequences
Seq C1 exon
CTGGGTTCTTTATGTGAATGGCAGGGAAAAGATAACAAACTGTCCCTCGGTGAATGATGGCAGATGGCATCATATTGCAATCACTTGGACAAGTGCCAATGGCATCTGGAAAGTCTATATCGATGGGAAATTATCTGACGGTGGTGCTGGCCTCTCTGTTGGTTTGCCCATACCTG
Seq A exon
GTATGTTTTAACAAAATGAGTATAATTCTGTTGGACTCTAGAGGTGATGCTGCTTAAATGGACATCAGGTTTGCTAGCATTGTTGTTCTTGGTTTCAAACAAAGATTAACAGCTATCTCTCTTATTTCCTACTCCCTGATTATCCTAACTGTGGGTTATTAGAAGCTTTTTTCCTAAGTAAGCTGTTTGCCTCTCTGTGTGAGAAATGCCTTTGAAGATCTACATTAAGACTACCAAGAAGCATGCTGAATTAGCAGCTGGTTGCTAAACTGTCTTCTAAGGAGATTAATTACTGGTATTTTTTGTTTATTTTAAGGATTGTTTTGTTTTGTAATCAGTATATAAGCAGGACCACTGCTATCCATCTTTTATGGCCCTTTTCAAATAGATCTTGGCTTGTCTTCTAAAAAATACTTTTTAATAAATATCCCAGGAGTTTTAGTTTGAAGAATTGCAAACTAAATTTCATTAGGTGACCCAGGTTCTCAGCATTGTACATGGCAATAAGCTTGTTCTATCTGGATACATCTATAGAAGTATATGCATATGACATTATTTTTTACTTTGCTCATTTGTTTCAGGTATACTAAAAGAAAATTAAATAGACAAAAATGAATTAAAGTATTAGAAACTGACTAATACATTCTAGAAGTAAGTTGTATGAAACTAGGATACGTATACTAATAAATATAGCACAAAAATACTAAACTTCATAAAAATGCGGTGAGATGACCCTTGCGAAGCCTCAAATACAATACTTATTTTATTTATTAGAAATTATTGGCCAGGTACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGAGGGTGGATCACGAGGTCAGGAGTTGGAGACCGCCCTGGACAATATGGTGAAGCCCTATCTCTACTAAAAACGCACAGAAAAATTAGCCAGGCATGGTGGTAGATGCCTGTAATTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGAAGATTGCCGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAATGGAGAGAGGCTCTGTCTCAAAAAAAAAAAAAAAAAGAAAAAAGAAAGAAATTATTGTCCATGTATTGTTTCACTTTAATACTACGAAGATCCATGCGGATCAAACCAAAATTGATCTACTTGTGAATGTAAAGAATACGTCCTAAGCACTCACTAGGAAAGCCAGGCACCTATGCAAGGCACTGGAAACCCAATGGTGGGCAAAAGTCGTGTGGTCCCTGCTCTCCAGATGCTTTTATTGTGGTCAGAGAGTGAGGTGTTCATCACATAATCACACTAAATGCTGTGTAATTTCACACTGAGGCAAGCACTATGGTGGAAAGGAACATCATTCTATGAAAGCCTGTACCCAAGGAGCTGATGTAGAATGGGGAGTCCATCGAGGCTTGTGGATATGTCCCTAACTCTCCAGGGTGATCAGGCACTAATTTAGTGAAGGAGCCTGGGCCTTGTTGAAAGCGCTAGAAAAAGATTGATGTATCTGAAATGCAGGCTGAAAGAGGGAAGGCAAGGCATGCAGGTAGAGAGGGCGGACATGGCCAAATCACGTAAAGCCATGTGGTGTAGGTTAAGGATTGAGGTTTTCACCCTAAAATCAATAGGGAGTTACTGAAGCATTTTAAGATGGATGGGGGAGATGGCAGGAAGGGTAGCTTAGGTGGTTCTGTCACGAGCAGAAAGAAGTAATAGGGTGTATGTGAAAATTCCTAAACAACAAAGAGGTTTCCAACCAGAGGACAAAAGGACTCCCCAGTGCAGGGACAGCACTGAGAGTTAATATCTGAACTCTAAGAAGCATTTATTATGCTTCTCCTGGGAGGGAAACTTGGGACAAATGAAAAATAAAAGAGAAAGCCACTCTTCCTTAAACCCCAGAATCACTGAAGAGAGGAATGAAACATACAGACAGATCCCTGGATGTGTATCCACACACTGAGCATTTGCCAAGCGCCAATCCAGCCAGTAAGGCAACATCTGAGTGTTGAGGTTCCAGAAATGGAAGACCCAAAGGACAGAGCTGTAGAGTCAAGGACACATGAATTTTGTTATGAGGAGAGGGCAGAGAAGGAGGCTCAGGATGTTTAATGAATTTAGGGAGCAAGGGTGATTTATAAAGAAATGGATTGGGGAGATTAATTTGGAGGGGAAGGAAAGAGAAACACAGACAAACTAGAAACATTAGGTTGTTGTAAGATGGGAGTATTGGGAGATTAATATAGAGGCTGCTTTTGAAAATCATATAATTATTTCATAATACTAGGGCAATATCTAATAAGATAATTTTGATGAAATCACTCTTGATAAATTTAAAACGTGGTCTATCATCCTTTGCTTCTTTGTAAAATATGCTTGAACAGGAAGCCAGTGCCAAAACCAAAACTTCCTTGTAATACCATTTATGCCTAATTACCCAAATATTTTTACAAAATTTACACAATATTTTTGTCACAATGATCATGTGAGTTTAATAGAGTAGTTATGCTACTATTTTAGAAATGAAGAAACAGAGAATTCCGGACGAGTTAAAATGAGTCTCTCAAATTGCATTCCTATGGCCTAACTCTTTTAATTTATGGCTGTGCCCTTTTCATGGCCCCTTCTGCCTTCACCACTTAGATTAGCTTATTGATACATGCCCACAGGTGGAGCAGGTGTGGGACCATTAGAAGCTGTAGCACTCAGAATGGAAGAGGGGACCTCAGGGGATGTGGATGGACACCCTCAGTATCTACCATACACATCACGCTAGACAATTCTTTCTGGCATTCTACCCACTCCTTTGCCTAGAAACTCTCTATATCTTCCTTCTGCATGAGATTAACTCTTAATCCTCAAGATCCAGGTCTGAAAGATTTCCCTGAGCCCAGCCCTTTCTCACTGAGCTTTTTCTTTCAGTTCTTCTTTGACTCTGCATGCCTCCATTGCTGCATTAACCACACTGTATCGGAAAGTATTTATGCATGAATTTTCCCTTAGAATTATCATCTCTTAGAAGAAGAAATGTTTTTTCATCTGTCTAAGTCCAGTGCCTGGTATTGTCGACAGCACATTATTGGTAGCTTCATAAACATCTGCTGAATTTAACCAGCCTGTGTCTTGAAGGATGAGTCAGAAGAACAGGGAAAGGCAGCTCAGACAGAAGGAGCTCTGCGTGCAGAGGCAGGGAGCCATGAATGGGGTTTGTGTGAGGAAGAATGGTTGGCTGATCCCCAAAGTAGTAGCATAGTGTATATAGAAGAGAAGAAAAGGAAGACGTGATAAAGAAGCTGAAACATAACATAGTGTTGGGCTGTAATGAGCCTGTTTATGTTCCCCAAGAAATGCACATTTTCTCCTTCAGTGAATTAACAGACATTAAAGGTATTTCAAAAGGAAATGGCATTATCAAGTGAGGTGGGGCAGTGGTTTGTGTTCATTTCATTTAGTGTGTTCTTGTTTTCAACTATCTCTTCTCTAAGTGGTGCGATTACAGGTGATTTTTATTGACTTCATTTTATGTTATTTTCATAATGAACGTATATTTATTTTCTGGTTAAAAAAAGCATTTTTATCTTTAAAATATAAACAATGATGGAAGAGTAAAAAGTAGATTGAAGGAACAGGAAAATAAAACCAAGAAACTCTTACAGTAACCACCTAAGGAAATAGCTTGCTGACCAGAGGCATAAGGATGGCCAGGATGTTTGAGAATCCATAAATATTGCAGAGTTCCAATTGACACCCTTCGTGGCTGTCTTAGTCTGCTTGGGTTACCATAAAGAAATACCATACACAAAGTGGCTTAAATAACCAACATTGGCCGGGCGCAGTGGCTCACACCTGTAGTCCCAGCACTTTGGGACGCTGAGACAAGTGGATCACCTGGGGTCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTCGCAGTGAGGTGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAAGAGTGACACTCTGCCTCAAAAATAAAAAAAATAAAAATACCCGAAATTAATGTTCTTGTAGTCCTGCAGGCTAGAAGTCTGAGATCAGGGTAGCAGTATGGTTGGTTCCTGGTGAGAGCCCCCTTCCTGGCTTGTAGACAGCCACCTTCTCACTGTATCCTCACATGGCAGGGAGAGAGAGAGCAAGCTTTCTGGTGTCTCTTCTTATGCAGGCATTTGTCCCATCACGTGGGCCCTACCCTCATGAACTCATCTAAATCCAATCACCTCCCAAAGGCTCCATCTCTAAATATCACCATGGTGGGAGTTAGGGCTTCAACATATAAATTTGGCGGGGACACAGTTCAGTGCATAGCAGTGAATGACTGGCTTCAGTTTGAGTGACCAAGTTTATTGAAGAGTCTGTTAGCTAAAGTAAGAATTCTAAAAAACGGAGTTGGTGAGAGGGGAAAAGATTGTGTATATGGTTTTCGACATACTGAGTTTAAGGTCTATGTTGAATTTCTAGTCACGAAAATACAGCTAAAGATATAGGTGTGATACTGCTTTATATCAAATTGGCAAAGTTGTTTTTAGTGACACCATAAAACTGGCTAGGATTCAGCATAGCAAACCTGTGTATAGAGCGCTGGCAAGTATGTAAGTTGATACAGTCTTTCTGGGAAACAATTTAGAAACTCGTATCAAAAGCCTTAGAGAAATTCTTTGCCTGCAACCATCAGTTTAACTACCAGAAATCAATCTAATGGAAATAATCAATAATTCAAACATACGTATAATTATGTATAAATAAACAGGTTTATCTCAGTGTCATTTTAGTATTAAACTTAGAAACAAGGCCAACATCCAGTAATAAGGGGCCGTTTAATTAATGAAGCAAATTATGCTTTGTTGTCCATTCATGTGTTAAAATAGCATAGCTAGACCAGGCGTGGTAGCTCACATCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGCTGGATCACTTGAGACCAGGAGTTGGAGACCAGCCTGATCAACATGCGTGGTGAGGGTGGGCGAAACCCCATCTCTCCTAAAAATACAAAAATTAGCCGGATATGGTGGTGCATACCTGTAATCCCAGCTATCTATTTGGGAGGCTGAGGCGTGAGAATCACCTGAATCTGGGAGGTAGAGGTTGCATTGAGCTGAGATCGCACCACTGCACTCTAGCCTGGGTGAAGGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGCATAACTACTAAAACTCATGAAATGAGAACGCGTTCAAGATGGTCTCACAACACCTTCAACAATATTCAAACATTCTGTATAGTATGATACTGAGTTATGTGTTTTAAAATACCTCACACATACATACACATACACTAAAACAAAATAAAAACTGGAAAGAAATACAAAAAACTATTAAATAATTATTTCTAGGTAAGAGGAGTTCTTTATAATTTATTTTAAAAATTTTCTTCTGTGCATGTATTAACTTTAAAATTATTAATACAATTTAAAAACACGTAGATTGGGAAATCATGAAGGAGGGATCTTTGGACATAGATTGACCAACAAGGGAGATCAAATTGAAAGAGTAGTTGACTTTGGGGACTTGAGGGAAGGGTGAGAAGTGGGTGAGGGATAAAAGACTACACATTGGGTACAGTTTACACAGCTCAGGTGATGGGTGCATCAAAATCTCAGAAATCACCACTAAAGAAGTTATCCATGTAACCCAAAACCACCCATTCCCCAAAAACTATTGAAATAAAAAAAAAAGAGTAGTTAAAGGAAGAAAGTCACAGGGTAGAATCTTGGGATCACTTCTAAGAGGCAGGCAGAGAAGGGAGACTGAGAATGAGCAGAAAGGTTCAAAGAAAACCAGGAGAGAATGCTCTGATAGAAATCAAGCGTAGTGTAATCAAGTCAGGCTCCTGGCAGGAAACAGGTAGCATCACTAAAGTGAGTTTAACGAAGGGCTGTTTTCAAAGGTGTGAGCATGGTTAAGAAGACCAAAATATGACAGTAAAACACATATGACTAGCAACAACAGATGGTTGTAAGGGATGGGCCTGAAATGACAAGGGTTAGGCATTGTTGCCAGAATTTAGGAACCTGTAGTGCTGGAGAGAATCCTCTGATCTCTTCAGAAATAGAAAAAGCCACTCCTAGTTGGTTGCCTGGCAGGAAGGGATACAGGAGTTTCAAGTTCTCTCTCATCCCTTTTTCTTATCTCATGCTGGCTCTTCATTGGCCAGAAACAAAGAGAAGACGGGGCAAGGAAGCTGGGTGATGCAGCTCACGGGGACAACCTTTGGGACACAAAGCTGAGTGGAGAAGGGTGGAGGGCAGTTCTGGCAGTGCAGACACAGACTGTCCAGCACACCCAGAAAGGCAAGTTGAATAGGATGAAATGCTTAACAGAAACAGCTGATACAGAGAAGTTACAGAGATGAATACTGAAATTTTTATTGAATTTGGCAATTACGAGACTCCTGGCAACTTTAGAAAGTTCTCTGGATTTGGTGATAGAAATTATATCATTGTAGCTTAAGGAATAAGAAAGATAAAGAGCAGTCACTTCCATGGAGGGTGATTTTCTACAAGAAAGTAAGCAAAATAACACCTAATTTGTCAACATAAAATATTATATGCATATATATGTATTGAATACAGTTTTTGTAGTTACAGGTTTATAAATCAACATTCTAAATCCTGTCTATTTTTAAGTTGCTATATAAAACATTGAATTTGTTCTTATTGATAAAACCTGCAGTAAATTTACAGAATTTTGCTTTTCAGTAATTTTCTTTCATTTATTTGTATCAGTCGTGCTTTCATTAAATTTGGATTTTAGGAATAACAGACCATCAGGCCAGTTTTCCTCCTTTTCTTTCTCTTTCTCTCTCCTTAG
Seq C2 exon
GTGGTGGTGCGTTAGTTCTGGGGCAAGAGCAAGACAAAAAAGGAGAGGGATTCAGCCCAGCTGAGTCTTTTGTGGGCTCCATAAGCCAGCTCAACCTCTGGGACTATGTCCTGTCTCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124-SVEP1:NM_153366:27
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0035412=Pentaxin=FE(30.4=100)
A:
NA
C2:
PF0035412=Pentaxin=FE(21.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)