GgaINT0062193 @ galGal3
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65137318-65138794:-
Coord C1 exon
chrZ:65138610-65138794
Coord A exon
chrZ:65137443-65138609
Coord C2 exon
chrZ:65137318-65137442
Length
1167 bp
Sequences
Splice sites
5' ss Seq
TTTGTTTGT
5' ss Score
-10.67
3' ss Seq
CTAATCTTCTCTGAGTTTAGGTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
TTGGGTTCTGTATGTAAATGGAAAAGAGAGAATCACAGACTGTCCTTCCGTGAATGATGGTAATTGGCATCACATTGCAGTCACATGGACATGCATGGATGGGGCATGGAGAGTGTACATTGATGGAAAGCTATCTGATGGAGGCAGCGGGCTCTCTGTTGGCTCAAAAATCCCTGGTATGCTTT
Seq A exon
GTTTGTGTTACCCCAGATCTGTTGCTTAATTTTTGTTTTTCTTGCAGAATTTTCTGTGCCTACAAAGAAATGATAATTTTGGTGCTTTAGTGTGTTTCCAACATGTAGGCAAGGATCTTCTTTGCTATTCTTGTTCATGAAGACTGTTCCTTCAGTCTTACTGAAGATCAAGTACACATTTCTGTGCTAAAGCAGTAGATAGCTTCTTTTGAGGATGGTACAGTTTAGTCCACAAAGGAGCCTATGTTCAGCAGCTTTTGGAATGGCTTTGAGAGAATATGTTTCTCAAGAACCTTAAGTAAACTGACATTTCCTGTAGAAATGTGTGCTGAAAGTTCATCAGATTAGCCTTCTCCTGTTTGATACTCTTCAGTGTCTTCCTAAAGTTAAGTTTGTACTTCATCCTATCAAGATGGATTTTGCTATTTCATTGTTTTCTGTGGTCAGTAGTCTTTCCAGTAATATCAGAAGACAGGAAAAGGAATAACTTCGGCATCAAATTGCTGTGAATGGCTTGACATTAAACTACTGCAAAGAGATTTGGTTTTGTTGGTTTTGCTAGTGTTTTCATGCCACTGCCTTCAGGATTTACGAACTTTTGAAAAACTCCCATACCAAAAGAAAAAAGAAGAAAAAAATAGAAAAGAAAAAAAAAAAAAGCAGCATGTTAGTCTGTGCACATTGTGCTTTTTCATCTACTTTCCGATAACACTGAAGTTATCTAGTTATCTCCAGAGGTAAGACCCAAAACTTGTAGGCTCCATTACTCTGCCCATGGTCTGCACACTCCTGTGGCTTACATAATGCACATCCATATAATCTATGTGAGACAATTTAATTTATGTGGCATGATGGAATGTTGATTCTCTTCTAATAATCTGTGTGCTTCTCAGGGTTTGGATTCAAATTTAATCTAATTTTTCCTGAAGGCAGGAGGTGCAAGCTGGCTCTGTGAAATACACCCCTCCTGCTCAAAACTGTGTCTTTCATTGCACTGTAATATATCCCACAGTAAGTGCTGGCTAGAAACTGTGTCCTAGAGCCAACACTGTAAAAGTCCTAATAATATGGGGTAGCAAAATTTTGCTTTATTGTTCATTCTTCCTGTGGGGATTGCTGCTTTAAGATATTGTTTCCTGCCCCTGTTCTAATCTTCTCTGAGTTTAG
Seq C2 exon
GTGGCGGTGCACTTGTACTGGGACAAGAGCAAGATCAGAAAGGAGAGGGGTTCAATCCAGCTGAATCTTTTGTTGGCTCCATCAGTCAACTCAATATCTGGGACCGTGTCCTGTCTCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0035412=Pentaxin=FE(31.6=100)
A:
NA
C2:
PF0035412=Pentaxin=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTCTGTATGTAAATGGAAAAGA
R:
CTGTGGAGACAGGACACGGTC
Band lengths:
306-1473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]