GgaINT0062193 @ galGal4
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66409632-66411108:-
Coord C1 exon
chrZ:66410933-66411108
Coord A exon
chrZ:66409757-66410932
Coord C2 exon
chrZ:66409632-66409756
Length
1176 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
CTAATCTTCTCTGAGTTTAGGTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
TTGGGTTCTGTATGTAAATGGAAAAGAGAGAATCACAGACTGTCCTTCCGTGAATGATGGTAATTGGCATCACATTGCAGTCACATGGACATGCATGGATGGGGCATGGAGAGTGTACATTGATGGAAAGCTATCTGATGGAGGCAGCGGGCTCTCTGTTGGCTCAAAAATCCCTG
Seq A exon
GTATGCTTTGTTTGTGTTACCCCAGATCTGTTGCTTAATTTTTGTTTTTCTTGCAGAATTTTCTGTGCCTACAAAGAAATGATAATTTTGGTGCTTTAGTGTGTTTCCAACATGTAGGCAAGGATCTTCTTTGCTATTCTTGTTCATGAAGACTGTTCCTTCAGTCTTACTGAAGATCAAGTACACATTTCTGTGCTAAAGCAGTAGATAGCTTCTTTTGAGGATGGTACAGTTTAGTCCACAAAGGAGCCTATGTTCAGCAGCTTTTGGAATGGCTTTGAGAGAATATGTTTCTCAAGAACCTTAAGTAAACTGACATTTCCTGTAGAAATGTGTGCTGAAAGTTCATCAGATTAGCCTTCTCCTGTTTGATACTCTTCAGTGTCTTCCTAAAGTTAAGTTTGTACTTCATCCTATCAAGATGGATTTTGCTATTTCATTGTTTTCTGTGGTCAGTAGTCTTTCCAGTAATATCAGAAGACAGGAAAAGGAATAACTTCGGCATCAAATTGCTGTGAATGGCTTGACATTAAACTACTGCAAAGAGATTTGGTTTTGTTGGTTTTGCTAGTGTTTTCATGCCACTGCCTTCAGGATTTACGAACTTTTGAAAAACTCCCATACCAAAAGAAAAAAGAAGAAAAAAATAGAAAAGAAAAAAAAAAAAAGCAGCATGTTAGTCTGTGCACATTGTGCTTTTTCATCTACTTTCCGATAACACTGAAGTTATCTAGTTATCTCCAGAGGTAAGACCCAAAACTTGTAGGCTCCATTACTCTGCCCATGGTCTGCACACTCCTGTGGCTTACATAATGCACATCCATATAATCTATGTGAGACAATTTAATTTATGTGGCATGATGGAATGTTGATTCTCTTCTAATAATCTGTGTGCTTCTCAGGGTTTGGATTCAAATTTAATCTAATTTTTCCTGAAGGCAGGAGGTGCAAGCTGGCTCTGTGAAATACACCCCTCCTGCTCAAAACTGTGTCTTTCATTGCACTGTAATATATCCCACAGTAAGTGCTGGCTAGAAACTGTGTCCTAGAGCCAACACTGTAAAAGTCCTAATAATATGGGGTAGCAAAATTTTGCTTTATTGTTCATTCTTCCTGTGGGGATTGCTGCTTTAAGATATTGTTTCCTGCCCCTGTTCTAATCTTCTCTGAGTTTAG
Seq C2 exon
GTGGCGGTGCACTTGTACTGGGACAAGAGCAAGATCAGAAAGGAGAGGGGTTCAATCCAGCTGAATCTTTTGTTGGCTCCATCAGTCAACTCAATATCTGGGACCGTGTCCTGTCTCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0035412=Pentaxin=FE(30.6=100)
A:
NA
C2:
PF0035412=Pentaxin=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTCTGTATGTAAATGGAAAAGA
R:
CTGTGGAGACAGGACACGGTC
Band lengths:
297-1473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]