BtaINT0145409 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99309991-99310400:+
Coord C1 exon
chr11:99309991-99310151
Coord A exon
chr11:99310152-99310342
Coord C2 exon
chr11:99310343-99310400
Length
191 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTGTTGCTTGTTTTTCCTAGACT
3' ss Score
7.75
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCCCAGTTCTTTGCCTTCCGCTGGCTGACCCTGCTGCTGTCCCAGGAGTTCGTGCTGCCTGACGTCATCCGGATCTGGGACTCCCTCTTCGCCGACAGCAACCGCTTTGACTTCCTCCTCCTGGTCTGCTGTGCCATGCTCAT
Seq A exon
GTGAGTGTGGCCGTAGGAGGGGTTGGGGGCGGGGGGCTGCTGTCAAGAGCTAGACTGAGCCTCTGGGATTCTCAGGGGAGCATCAGTCCAAACTCGCTGCAGGTGGTGCGGCAGGAGCAGGACGAGGCCCAGTGGGCCTGCTCTCAGAGTAGTTGAGGGGCCCAGCGCTTTTTGTTGCTTGTTTTTCCTAG
Seq C2 exon
ACTGATTCGGGAGCAGTTGCTGGAAGGGGACTTTACCGTAAACATGAGGCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480:ENSBTAT00000016559:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.5=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCAGAACATCAAGCCC
R:
TGCAGGAGCCTCATGTTTACG
Band lengths:
218-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development