RnoINT0147924 @ rn6
Intron Retention
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8715020-8715403:+
Coord C1 exon
chr3:8715020-8715180
Coord A exon
chr3:8715181-8715345
Coord C2 exon
chr3:8715346-8715403
Length
165 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GGGCTCTCCTTTCCCTGCAGACT
3' ss Score
10.26
Exon sequences
Seq C1 exon
CAAGAACAGAGTATCAAGCCTCAGTTCTTTGCCTTCCGATGGCTGACACTACTGCTGTCCCAGGAGTTCTTGTTACCTGATGTCATCCGGATATGGGACTCCCTCTTTGCTGATGGCAACCGCTTCGATTTCCTCCTCCTGGTCTGCTGTGCTATGCTCAT
Seq A exon
GTGAGTGGGGCCATGCTCAGCCTATCCTGAAGGGAAGCTGGGGGGAGGGGTGCCCAGTCCTGAGTGGTGAGCAGGGGCCAGCCTCCACAGCCAGAGAAAGCCTGGGCCTGTGGGCAGCCCCTGCGGCAGCCAGGGCCCAGCACTGGGGCTCTCCTTTCCCTGCAG
Seq C2 exon
ACTGATCCGGGAGCAGTTGCTGAAGGGGGACTTCACTGTCAACATGCGGCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970:ENSRNOT00000021431:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.3=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACAGAGTATCAAGCCTCAGT
R:
CTGCAGAAGCCGCATGTTGA
Band lengths:
219-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]