HsaINT0163987 @ hg19
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131568138-131568590:+
Coord C1 exon
chr9:131568138-131568298
Coord A exon
chr9:131568299-131568532
Coord C2 exon
chr9:131568533-131568590
Length
234 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTGCTGCTGCTTTTCATAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
Seq A exon
GTGAGTGCGGGCATGAGCTGTCATCAGCTCACCTGGGCAGTCCTTGGAGAAGCCAGACAGGAGGACCCTCCGCCCCGAAGGGTGGGCAGGGCTGCTCTTTCATGGCTGGAGTGGGATTCTGGAGTCCTTGGGAGGGCGACAAACCAAACTTGAGGTGGGTAGGGAGGGAGGAGTGGGCAGGGCCTGCACTCAGAGCATCCCAGGTCCCAGCGCTTTTGCTGCTGCTTTTCATAG
Seq C2 exon
GCTGATCCGGGAGCAGTTGCTGGAAGGGGACTTCACTGTGAATATGCGGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-TBC1D13:NM_018201:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(31.7=100),PF038478=TFIID_20kDa=PD(8.0=7.4)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(7.7=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAACATCAAGCCTCAGT
R:
CAGCAGCCGCATATTCACAGT
Band lengths:
212-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)