HsaINT0163987 @ hg38
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128805859-128806311:+
Coord C1 exon
chr9:128805859-128806019
Coord A exon
chr9:128806020-128806253
Coord C2 exon
chr9:128806254-128806311
Length
234 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTGCTGCTGCTTTTCATAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
Seq A exon
GTGAGTGCGGGCATGAGCTGTCATCAGCTCACCTGGGCAGTCCTTGGAGAAGCCAGACAGGAGGACCCTCCGCCCCGAAGGGTGGGCAGGGCTGCTCTTTCATGGCTGGAGTGGGATTCTGGAGTCCTTGGGAGGGCGACAAACCAAACTTGAGGTGGGTAGGGAGGGAGGAGTGGGCAGGGCCTGCACTCAGAGCATCCCAGGTCCCAGCGCTTTTGCTGCTGCTTTTCATAG
Seq C2 exon
GCTGATCCGGGAGCAGTTGCTGGAAGGGGACTTCACTGTGAATATGCGGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021:ENST00000223865:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(58.2=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(7.7=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAACATCAAGCCTCAGT
R:
CAGCAGCCGCATATTCACAGT
Band lengths:
212-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains