BtaINT0145427 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118282738-118286768:+
Coord C1 exon
chr6:118282738-118282844
Coord A exon
chr6:118282845-118286687
Coord C2 exon
chr6:118286688-118286768
Length
3843 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACCGAAGGCTTTTCTTCCAGAGC
3' ss Score
4.75
Exon sequences
Seq C1 exon
GTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCAGGGAATCCCTCCCAGCGTGAGAGGCAAGGTCTGGAGCTTAGCCATTGGCAACGAGTTAAACATCACTCACG
Seq A exon
GTGAGTGGCTCGCGTGGTCCTCGGCCCGGGGAGCCTGGCCTCCGTCCTGGGGCATCTCTCTCCCCATGTGCCCGCTCAGGAAGAAAGGCAGCCGTTGCCACGAAGCCATGTCTTTCGAGAGGCCAGCATGCCCTCTGGGAGGCGGTGCATTAGGGACCCCGGGTGCACCCCGGGTGCCTCAGTCATCTGGTGGCTCAGAACCAACGCCCGCCTCCCTCCTGAGCCGGTGATCCTCCCTGACACGCGGCGGGGAACACTGGTGGGCTGAGTCACGCCGAGATCTCTCCTCGAGCTGTGTGGAAAGCAAGCTCGACGGGGATGGGAGAGTGGTGTGGGGTGTTTCTCTCTGTGGAGGTGCCGTGTTTGTGGCGTTTGTCGTCCCGCCTGGCCCCGGCGTCTTCTACGTGAGCAGCTTAGTGGGGACGGCACCCTCTGCTCCTGCCACGTCCTTGAGGGTCTAGTAGCTTCAGTCCAGAGGGAGGGGAGCCCTGCACCCTCATTTTTTGGAGGTGCCATGCTGTGCAGCTTGTGGGATCTTAGTTCCCAGAGTAGGGATGGAACCCTGGTCCACAGCAGTGAAAGCCCTGAATCCTAGCCACCGACCACCAGGGAGTTCCTGGACCGTGCTTTCTCAGGGCTGTTCGTCCCACCGCATGCCCTCGTACAGTTCGGGCGGGATTTTCTTCCACAAGGGTGTCCACTGCTTCGCTCCCTCCCTATCCAGCGCTCTGCAGGCTGTGACCCAGAGTGAAACCCACCCTAGGAGCTCGGGCTCACAATGAAGTGTCTGGGAAACAGGAATCTTTACTTCCCTCCCTTCCCCTCTGTCTGCAGTCTGGAATAAATATATTCTACATTTAGACCTGCAGTGTTCTAGATCAGGTTCTTTGTTGTGGTTTTTTTTGGTGTTTTCTTGTCTGGAATTCATTTGTGTTTATTGCCTTACTTGTCCTTACTTCAGTTCCTTACAACAACTGACAGTTGTTGATGAAAGTAATATCGAATTTCCTCTCTGCAGTCTACACTGCCCAGGCCAGGAACTCTTCCCTTATCTTCTCTGTATTAGTGCCCAGCTTGTAGAGTTCGTGGTGGCTGGCTTTTTTTTTTTTACCCTCTTGAAGGCCCTTGAGTGTAAAATAGATTGGTTTGTAGCTTCTCCATGGCTGGGGTTCATACTGTTGTTGTAAGTTTTATTTTGTAAGATACCGATCTTACACTGTCATTTCAGCCCTGGCCAGCAGTGTTCTTCCTCTTGAGTAGTGACAGCTGGTTGGGTGGATGGTTACTGGTTCTTTTCTTTGTCATCTCCTCAGAGTTCCATTTTTTTGTCGTTGTTAGTCCATGCCTGCCCCAAACTTAACATCTGTAGGTGAAAAGATGGGTAACATTACTTGTGGAAATGGTTTCACAAAAGCTTCCCCAGAAGTCAGCGTCTGGAGAATGGACCACAGTTTGTCTCAGTCCCTGTTCTTGAGAATTTCTAAACGTGTCAGCGGCTCTAAGCCTGCTGGGCGCAATGCAGCGTGCTCTGAGTGTGTGTATTCTATTTAATTTTTCGTTCTCACTGTCGGCTGCACTGATTTCATTTAAATTAAAGTCCTCCATAGTCTATATCAGTGTATCAGGCTAAATGGCTTGATTAGTCAGCTCCATGCCTTGACAGTCTGCGTAAGTCTCGACACTGGCCGGTTCTATTTAAATCGTGTCTTTCTTGTGTAGCTGAAGTCAGGTGCCCACCTCACTTGGTGCTCAGCAGGGTGGGGCCTCATGCTGTGCCTTCGTCACCCGAAACCCTGCACAACCTCTGCAGTCAGGCCCTCAGGGAGTGTTTGCTGGATGAATGAAGGAGCAGGCGGATGAGTGTGAATGCTGCCTTATTGGGTCCTCCTTAACCTCAAGGTTGGCTGTGTATTGAAGCCACCGTGGCTGCACTGATGAGCTTGAAGCCCCCTCTTGAGGCCAGGCATCAGGTAGGCCCTTTCTCACGTCTCCGTGAACGTTGACCGCAGTCTGAGGGGCAGGGACTGTTGGCCTTGTTTCCCTACTGAGGAAGTCAGCCACCCTGACAGGTTAGTCAGCTAACCCTGAAGCCCAGGCTGCGGTTTGGGAAGCCCCAAGGTTTTGCTGTTTCTGTGGCTGTGCAATTGGAAACTCACTGAAAGTCAGCCTGGTAGTACCGTTACCTTCACCTTTGAGGGAGTTAGCCTTGTACTTCGAAGCTCCTCCAGGAAGAAGGTGGGGTCACTGTTTGAACTCCCTCTCTCCCCACACACGCACGCCAGCTAAAGCGTGGCGGTGTTGTGGAAACTGCCCTTTGCCCCATGTTCCCCAGGGCTGCCTGCGTCTGTGCTGTAACTGTCGGGCGCCTCACTGGGGAGCGGCTCCCAGTGGTCGGGCCACGTGGTGGCTTTCCTCCACCTCCTGCCAAGATGAGCAGAGCTCCGCCCGCCTCCTGGAAGCAGAGTGAGCAGGGGCGCCCCAGACCCTGTGTCCTCCGGCTCAGCACACCCCCAGGTTTGTCCCACAAGCAGCTGAGTTCAGACACCCGCTGCCTTCCAGGTTAATATGACGTGAATGTGATGTTACGTTTCACAGTTGTTCTGCTCTTACAGACAAGCGTAGATTGTACGTCAGGTCCTTCCTTTACAAGGTTAGCAGGAGGTTGGTAATCAGAATTTAGCTTGTTACAACACAATAGTGTTACTAGAATTTGACTTATATTTTTAAAAATAGCATTTACTGTCTGGGGCGCAGTTGTGCTTCGCTTTATATTCCAGAAGTACTGAAGGGAAGAATAAAGTGGTAGGAATTCTCTGGGTAGCAGCAGTTAAGTCTCAGTGATTGTTCCTGATCCAGGGCAGCCAGTGGCTGGGCACTGTTGGAGCCAGAGGAGCCGGCAGGCGCGGGGGCTGGGTGGGGGCAGCAGAGGCTCGGAGGTGTCTCTGGGTTCAGTCTCTGAGGAAGGGTGGGCCGTGGAGGTCTGCATACACAGTGAGGTTTGTGAGCTCGAGTTGTTTCACCATGGCCAGACTGCCCGAAGAGAAGAATGAGTAAATACGTCCCAGATGTGAAGACTGGCAGTTGCCTGGTGAGCCTTGCTGCCACTGGGAAGACTTATTTTGAAACTTCTGCCTGTGTTGCTTTCACCCTCCTGCGCTTTCAGGCAATAAGCCCAGGAGGACTGGGCCTGGGGATAGCGCTTCCATCTTGTCTTTATTTGAAACCAGATGGGTTTTCTGCTTGTTTCCCGCTTTGTTCATCGGTCATGTGCTCACTGAGTGTCCTGGTCTGTGTCTGTCCCAGTGCTGTTTGTTCTGGATTCAGACATGACCAGAGACCCTCACAGTCTCACCCCGGAGCTCAGAGTCTAGTGAGGCCATAGCCTCATCGAACACATCAAAACAAAACAGCTTTACGGGTGGGTGGTGTGAGAAACCAGGCGTAGTGACATTTGGGCTTCCCTGGCGGCTCAGACAGTAAAGCGTCTGCCCACAACGCAGGAGACCCGGGTTCCATCCCTGGGTCGTGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCGGTACTCTTGCCTAGAAAATTCCACGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCACAAAAGAGTCGGACACGACTGAGCGACTTCATGATAGTGGCATTTTGTGTATTTCTTTGTATATGGTGATGTCTTTAGAAAACAGAAGTGCCTTCCGGCCAGAAGGGAGGAAGTAGCTGTAATCGTGGAGTCTGTGGTTGAACTTTAATTATTTGAACGAGGCGGCAGTGTATTCTCTGCTGTGCACGTGATAACTTACCGAAGGCTTTTCTTCCAG
Seq C2 exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(10.8=54.1)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]