DreINT0160571 @ danRer10
Intron Retention
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39423226-39424535:+
Coord C1 exon
chr7:39423226-39423332
Coord A exon
chr7:39423333-39424448
Coord C2 exon
chr7:39424449-39424535
Length
1116 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
TACATTTACGTTTATAACAGAGC
3' ss Score
5.6
Exon sequences
Seq C1 exon
GTGTTCATCGAAGCGGGTGAGGGATTTATGGTGGCAGGGTCTGCCACCCAGTGTGAGGGGTAAAGTCTGGAGTCTGGCAATAGGAAATGAATTGAACATCACAGATG
Seq A exon
GTATGAATGTGTTGTTTGCTTTACCACTCAGACCTCATAAATATCAAAAGGATGAATTTAATTGATTTATTAATTAAATAAATTGCTACATTTTATAATTATAATAGTTTATAAAATATATACGACCAATCAAAAGTTTGGAATCAGTTTTTTTCTCATGTGTTTTTTATTCTGTTCATCAAGGCAGCATTTATTAAATGCAAAAAAAAATTGTTAAGGTGTTATATGCTTATTGAAATTTTAAATAACTGCTTTCTTTTTGCATGTAGTTTCAAATAAAATTATTATTCCAGTCTTTAGCTTTTATTACTATTGCATTAATAATAATAATAATAATAACAATATAATAATAATTAATATTAGAGTGATTTTTGAAGGATCATGTGACTGGAGTAATGAAGCTGAAAAATTCTTTAAAATTACTGGAATAATTTATTACATTAAATTATAAACTACTTCTATATATTGCTTTTTTGTGTGTTTTTTTTTTCTCCAAAAGAGCTAATTATTTAAATTTTTCTCCTACTTTTTACCAAAAACGTGCATATATTTTTTTACTTTAAATTGGCAACATGAGCTTAACTTGCATGATCACTAATCATGATTAAAATATCAAGCTTTGTAAAGTAACGAGTAAGAATGTTTCAAATATTGAATATGAACTCATTCTTGATGAGATGGACAGGTTTGCAATATATAACATATGATGCATTCTGTTCATGCATTTTATGTTTAGTAAATATATGGGTGCAATCCTTGGAGATGAGTTAACACTTTACTTTAGCAGATCTCCAATGAAACTTTTGGGTGACACCACATCAATTTTTTAGTTGGATTGTTACACGTTCCATATAGAAATAACAATAAATTATTTATGATTGCATTTAACTAACCCTAAATTTAACCCTTATCTTAATGTAAACCAGACAGTAACGATAAGTATAGTTCATTAATATCGTTCATTGCTTGGTTAGACTGTAACAAGGATATCCTAAAATAGCATGACCCAAATTTTGATTCATAAAACCAGTTACATGTAATAACCATACTGTACCACAAGAGGGTGTCATTGGAAAGGAAATGAGAATCTGATATTTACATTTACGTTTATAACAG
Seq C2 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520:ENSDART00000133420:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(18.8=100),PF0056613=RabGAP-TBC=PU(8.7=54.1)
A:
NA
C2:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCATCGAAGCGGGTGAG
R:
ACTTTCAGTTTCCACAGCAGCT
Band lengths:
190-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]