HsaINT0164009 @ hg38
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family member 14 [Source:HGNC Symbol;Acc:HGNC:29246]
Coordinates
chr4:7001145-7004924:+
Coord C1 exon
chr4:7001145-7001251
Coord A exon
chr4:7001252-7004843
Coord C2 exon
chr4:7004844-7004924
Length
3592 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCCAGAGGCTTTTCTTCCAGAGC
3' ss Score
3.94
Exon sequences
Seq C1 exon
GTGGTGCTCTAGAAAAGTTCGAGATTTATGGTGGCAGGGAATCCCTCCAAGTGTGAGAGGCAAAGTCTGGAGCTTAGCCATTGGCAACGAGTTAAATATCACCCACG
Seq A exon
GTGAGTGGCCTGCATGATCCTGGGGAGTCCACCTCCAGGCCCTTTGGCTTCTTCTCTCCCTTTTGCCCTGTTGGAAAGAATGGCAGCCATTGCCACGAATCTGTGTCTTTTGAGAGACCAGGAGACTGTGTCCTTCAGGAGAGAGGGGCAGTTGGGAGGCCTGGGTTTAGTGCTGTGCACTCCGGTTACCTGACAGCTCAGCGCAGGAGCTCTTGAATAGAGGGGGCTTGGAAGACAGGGCTTAGAGCATCGGGGAGGTGCCTGAGCTTCGCAGATCAAAGTCCTAGGAAGGCAAGCCTTGCCTGCGACGTGAGTGTGGAAGGGGCAGGTGGTTCTTGCTGTGAGGGTGTTTATTGTACTGGGGTGTCTGTTGGTATTTTGTGGGATTTTTTTTCAGGCAGCCTTGGAGGAGACAACATACTGTGCTGGGACTGCGGTCCTTGGGGCTCTGGGAGTTTGTCTGCTGGGTGAGAACCATGCTCACCGATCTCTCGCTGTATTGCATCTACTCAGTTTGCATGTACACTTCCTCCCTCAGGCTGAATTCACTTCCCCAGGTGTCCTGAGCACTCTGAAGCGCGTCCAGAGTGAAATAGGTGCCAGGAGCCCGCAGACTTCAAATTAAGTGATTAATACTGGCAGCCATTCTTTTCACTTCTGCCTCCCTGCCTGCGGTCTGAGCTGTGGAAAGACGGGGCTACCTTCCTGCTCTTTCTTGGGCCTAGGACCTGCTGGGGAGTTGATGATGTGGTTTTTATGCTCATGAAGGCCTTGAGTTTAAACATTTGATTTGTATCTTCGCTCTCTAGTTGGGGTTTTGATTGTTGTTCTTATCCTGACAGGTTATCTTAGCCTCATCCCAGGCAGGTCTCCCCTCACGCCCTCACGGAGCGTCAGCCAGCTGGCTGGTGACTGGCTTCTGTGCGGTGTGGTCCTACAGAGGAACGTGGGGGCCCGGAACTCCCTCTTGGCTAAATCCATACCTACCAAAATTTTGTTTTAACATCTCTGTGTGAGAAGATGAATAACGTTTAACTTGTGGAAATGGTTTTTTAAAAGTATCCTCAGAAGTTGAGGTTTGGAGAAATTACTGAGCATTTATTTCTAAACTCTTGTCTCTGCAGATTGGATGGAATGCACAGTACCTTGTGTGTGTGTTTAATTTTTGCTTCTCACTGATGCCTGGGTGGATTTTATTTAAATTAAAACCTATGGACCGTATTGTTTTGGATTGGGCTAAACCGCTGACGAGTCAGTTACATGTTTAGACATGAGTCTTAGACATTTATCCAAACCTTGGTATTGGCTCGATTTGTGTACATTGTGTCTGTCTTGTATTGTGAACCGCGCAGTGTCAGTGGCCCCCGCTAGCACTGGTACTCAGGAAGCTGGGCCCTCACCTGCTGTGCTCTCTACCTTTTCACCCTTACCAAGCCTGGGTCTCTGCATGGGGCAGGCCCTTAAGAAATACCTGCTGTGTGAATGAATGCTGCCTTACTGGGTCCTGCTTAATCTCGATTTTACTACGTTTCCAAGCCAGTGTAAGAACACAAACAAACTTGGTTGCTGAGTACCAAGCATCATATTAGGTTCTTTACTTATGGATCTTATTTAATATTGACAGTGCGACCTTGACCTCATTTTCCTCTAGAGAAGGCTCAGCATCCTGGAAAGGCTAGGACTGTGCCCAGGTCTCTGGCTCGTGTGTGTGGGGCCAGGACTCTGATCCTAGGCCCAGGCTAATCCTAAATCCCATGTTCTGACTTGGAGAGCCCTAAGGTTTTGCTCTTGTGGTTGTACAATTGAAAACTTAGTGAAAGTCGACCTAATAGTACTATTAAAACTTCAGTTTTAGGGCCCCAGTCAATCTTGTACTTTGACATTGGAGCAGGGGGTTTGGGCAGAAGGTGTGGTAGCTGTCCAGCCTCCAGCGTTCCCCAGATGCACACCAATAAAGAAAGCCATGGGGGAGACTTACAACTCTTTGACACTTTGACCCATTAAACCCCGAGGCTGGCAGCCTCTGTGACTTAAATGTCAAATGCCTTAGTTGGGAAGGGATTCCCTAGTGGCCATGGCCACACAGTGGTTTTCATCCACCTCCTGCCAAAATGACCAAAGCTTGGCCGGCCTCCTGGAGGCCGAAAGCAGGTGGAAGTGCCACCAGGTGCATGAGGCAGCAGCTCAGAGCAGTGTGGGATTGTCCTGGGAGCATGCGTGCTGAGTTACTGCTTTGGACACTGATACCATAATAGCGAAACTAGATTTTGGATTACATTTTAATAAAATAGTGTGCACTGCCCAGAAGGCAGATGTGCTCTGCTGTATTTTCCAAAAGTAATGATGGGAAAAATAAAGTGCTGAAAATTCCATGGGTAGCTGCAATTAAAGTCTTAGTGATAGACAAGTGATTGTGTGTAATCTGAGACATCTGGGAGCTGATCAGGAACATCAGAGCCAGAGGAGTGGCGGGTGCAGCAGCTGGCGCTTGTCATCCCAGCACTTTGGGAGGTTGTGGCAGGGGGGAATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACACGGCCAAATCCCATCTCTACTAAAAAAAATAAAAAATTCACCAGGTGCGGTGGCGTGCACCTGTAATCCCACCTATTCAGGAGGCTGAGGCAAGAAAATTGAGATTGAATCTGGGAGGCAGAGGTTACAGTCAGCCAAGATTGCGCCACTGCACTCTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCGGAAAAAAAAAGAAAAAGCCAGATGACCAGGAAGCACCTGAGACTGGGCTGTGTCGGGGAACAGGGCGCTGAGAAGGAGCTCTGTGGATTCAGCCTTCACACTTGTCCTTGAAAGAAGAATGGGGCACGGATATACCTGTGGAGGTCTGTGTATGCTAGTGAAGTCGTGTTGTTTAACTATTACCAAACCACCCGAAGAGAGCTGTCACAAAAATAAGTTCTAAATATGGAGATTTGGAGGCTGTCATGATCCTTCTCTGCCAGCAAGAGTCCTGTTTTTTGAAGCTTCTGCGTATTCCTGGGATCTTCCCCCACCCCTGCTTCACTGCCAGGCAGCAAGACGAGGCCTGTGCCAGGTGGGGGCAATTGCACCATGTCCTTTCTTGAAACCCAATGATTCTCTGCTGGTCCTTCCTTCCCTCCCTCGGTCATTGAGACATTCCTTGATTGGGTTGCTCTGTGTCAATTCCAGTGCTGTGTGTTTTGGATACAGAGGGAGTGAGAGAGCTTCACCGTCTTGCCCCAGGGATCTTGCGGTCTGGGAGAGGCAGTAGACAAGTCACAAAGACCAAAACAAGGCAGTTTTGTGGGTAGGCTGTGTCAGAGAACTAAATAGCAGTGATGTGTGTAATCTTTCTTTGTTTCAGGCTGTGTCTTTAAACAATAAAATTACTTTCAGGCCAAGTTGGGGGGAATTGTTTAAGTAGCCTGTTAAGTATGCATTAAGCCTATTATAGTTGAACTTAAGTATTTGGAGGAAATAGTACTGTGTTCTGTGGTGGTTTTGACGAAAAATACATGTGCACGTAATACTTACCCAGAGGCTTTTCTTCCAG
Seq C2 exon
AGCTCTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCCTTAGCACAGGAGGCTCTGAAGTGGAGAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405:ENST00000409757:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(12.5=54.1)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains