GgaINT0069294 @ galGal3
Intron Retention
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82879302-82880387:+
Coord C1 exon
chr4:82879302-82879408
Coord A exon
chr4:82879409-82880306
Coord C2 exon
chr4:82880307-82880387
Length
898 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTCTACTCTTCTTTTTCCAGAGC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTGTTGTTCCCGTAAAGTTCGAGAGTTATGGTGGCAGGGCATTCCACCGAGCGTGAGAGGCAAAGTCTGGAGCTTGGCAATTGGCAACGAGTTAAACATCACCCATG
Seq A exon
GTGAGACTGTCATCTTGTCTACGTTGCGATATGAAGAGAAATGAGTCTTGTATTTACTGAGTTGCATTAGGATCTGATTTGTGGGCATGAAGTATTATCTGGTTAGGTTTTATTTCTGGTGCTTTTAAACGCTTTGTTCAAAAATACTGTATCTTTTAATCTGGTAGCTGTTTTAGGACTGCTGCATGAATTATTTCTGATTATTACCGTCATTGTGTCTTGCTTTGATGTTACACGGAAATGGTCAGAGCTACTCAAGCTTTTTCCTTTCTTTTTTTTTTTTTTCATATTAAAATTGCTTTTCATGTTGTAATGCCTGTGAGTATGCAGTCTCTCAATTTAGAGCAAGAAGTTAGGGCTATATGAGATTGAAAGACTTCCAGGAAAATGAGTCCATTTGCTTATATGTATGCTTATGGAAACAGAAGCAGTGTGCTACTTCACACTACAGCAGAACAGTTTTGAAAGACAGTTAATTCCAGTATGGAATGCCCATCAGGGCAGTGAACTGCCGGTACTCTTGCTAGTATTGTGCTGCTTTTCTGTGTTTGGTTCAGTTACCTCTGGTTTAGTTTTTGCCTTGAATTTCGTAGTCTTATCCTAGCCATCTGTTCGCACTGTAACTTTGAATGTCAGTGCTCTGTAAGGAAAAAATAATTGCTTGAACATGGAATGCAATTTGTGCCTTGGATGCCTTTCGCTCTTTCTTGATCTTAAATTATAGGTCAGTGGAACGGGTCTTTCAGAACCATAATCAAAAATTCAATTAGTATGTCACATGTACTGCTGTCTGTATGCTTGGAGCAGCATTGCTTATGTGGTACATGGTTGGTACTTGACAGTAAGCACGTGTGTATTCAAATAGCACCTTTGATTTTCTCTACTCTTCTTTTTCCAG
Seq C2 exon
AGCTATACGATATTTGTCTGGCTCGTGCCAAAGAAAAATGGCGATCACGTAGCACGGTAGGAGCTGAGGTAGAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546:ENSGALT00000025058:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGTTCCCGTAAAGTTCGA
R:
ATTCTACCTCAGCTCCTACCGT
Band lengths:
182-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]