BtaINT0146406 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54260522-54260984:-
Coord C1 exon
chr17:54260850-54260984
Coord A exon
chr17:54260600-54260849
Coord C2 exon
chr17:54260522-54260599
Length
250 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TGTTTTTATTTTATTTCTAGGAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
AAACACTTTTAAGTACTGGACCAGCCCCCAGGAATGTGAACGTGGAAGAACATTATATTTTCAGGTGGAATAATAATACAATCAGTGAAATAAACGTCAGAATTATCAGGGCAGAAATTAATGCCCAGCAGAAAG
Seq A exon
GTAACTTTGTGAAGGGCAGCGAGAATGCTTTTAATTTAAAGCGTTTTTTTCTTTCTTCACGATTCTCATAATTATACCAGATAAACTAATTCAGACCTGTTTTTCTTATTTGTGTTTATGATTTAATCAGAAAACAGTGGAGTTTTTTTTTTTTTTTTGCATGTTGAAATGCAATTATAAGGCAAAGAAAACACTATGGTGGATAATTTCTTAGTAAATTGGTGACATTATGTTTTTATTTTATTTCTAG
Seq C2 exon
GAATCATGACACAGAGATTTACAGTGAAATTTTTAAGCTATAACAGTGGTAATAAACAGGAATGGTCTGGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF077736=DUF1619=FE(16.6=100)
A:
NA
C2:
PF077736=DUF1619=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACTTTTAAGTACTGGACCAGC
R:
TGGGTTTCCAGACCATTCCTG
Band lengths:
212-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development